Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00378 ATGGAAAATTCTTCATCTTCTTCCTCTTCAAATTCTATATATCGAGAGTGTTTGCGCAACCATGCAGCAAGCCTCGGCAGCTATGCTACGGATGGTTGTGGAGAGTTCACTCTCGATATAGATGTCTCCTCCTCCACTCTTCAGTGTGCAGCTTGTGGTTGTCACCGCAACTTCCACCGCAAGGTGACGTGTCCTCTTGCGGTGGATGGGTTGCCGGGAGGAGGAGGAAGTGGAGATATGATGGAGTATTCTGGAGGAGATGTGGGGAGAATGGAGGTTGGGGAGAGGAGCAGCAGGAAGAGGTTCAGGACTAAGTTCAGTGCGGAGCAGAAGGAGAAGATGCTGGGGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATCGAGAGGTTTTGTAAAAGTGTTGGAGTGACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTCTCTTCTCTCACTCAGTGA 522 0.4885 MENSSSSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDIDVSSSTLQCAACGCHRNFHRKVTCPLAVDGLPGGGGSGDMMEYSGGDVGRMEVGERSSRKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00378 173 Gene3D - 84 163 - -
Phco5g00378 173 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 158 - -
Phco5g00378 173 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Phco5g00378 173 NCBIfam homeobox domain, ZF-HD class 99 157 IPR006455 -
Phco5g00378 173 FunFam Zinc-finger homeodomain protein 2 88 161 - -
Phco5g00378 173 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Phco5g00378 173 SUPERFAMILY Homeodomain-like 92 158 IPR009057 -
Phco5g00378 173 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00378 Phco-Chr5 3323574 3324095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco5g00378 ZF-HD_dimer 8.2e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03755 4 56875843 56877485 Phco5g00378 5 3323574 3324095 PCT