Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00344 ATGGTCTTCAAGGGAAGGTTCTTCTCTTCCAAGAAATCCGATTCCTCGAGCCCCGATGCGTCATCCAACAGTCCTCGATCTTTCTCATCCAATTCCCCTTCCAGATCCGACAAGAAGAAGGCTAAATCCGCCGCTCATCCAACTCTAGCAGCCGGAGGCAGCGGTGGCGGAGCTCTTGCTGCGTGTCGTCAGACGCAGGTGAAGGACGGGACCAAAAAGAAGGATGTGCTCAAGGGGAAGGAAAGTCAAACTCCGCCGCCGGAGCCTAGCAAGGAATCTCCGGTGAAGAAGTTGACGGCGGTTGAAGGACGGGAATCGTCGGCGTCGGCGTCGGTGTCGCCGATTCTGGCGTCGTCGCTGGGGCTGAACAGGATCAAGACGAGATCGGGGCCGCTGCCGCAGGAGAGCTTCTTCGGGTTCAGGGGCGAGAAGGGAACGACGGCGCTCGGCGGCAGCAACCTCTCCCGGCCCGGAGTCGGCGTGCGCGGCGGCGATGGGAAGAAGAAGGAGGCGGGGAGCCAGAACAGGGTCGGGTTTCGTGAGGGTTCCCGCGGCGGTGCCGTTGCGGCCGGAGGTTGGGGCGATAACCGGAACAATTCTGACAGCGTGTCGACCTCGGGGAGCATGCCGTCTAGGGAGCAGAGTCCGGTGGTGTTGCCTCGGTCGCGGTTGCAGAACGGAGAATCATCCTCGGAGGCCGCAGGCAACCAGGCATCATCATGGGCTCAGTCTGGAGGCTTAAGAAGTGAAGATGTTTGTACTCCAGAGGCAGCATATGATTTTGAAAACCCAAAGGAGTCTGAATCTCCTCGTTTTCAAGCCATATTACGCGTCACTAGTGCACCTAGAAAGAGGTTTCCTTCAGATATCAAGAGTTTTTCCCATGAGTTGAATTCGAAAGGTGTCTGGCCTTTTCCATTTTTGAAGCCTCGACGGTTAAATAACCTTGAGGAGATTTTGGTTGTTATTAGGGCAAAATTCGATAAAGCAAAGGAAGACGTAAACTCTGATCTAGCCATTTTTGCGGCAGATCTGGTTGGAATTCTTGAAAAAAATGCAGATACTCATCCTGAATGGCAAGAGACAATTGAGGACTTGCTAGTTTTGGCAAGGAGCTGTGCTATGACTTCATCAGGGGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGAGTTGGATGATAGGCGTCAAGATCATCCTCCAGGGATGCTAAAGCAGCTTCACACTCGAATGCTTTTCATTCTCACAAGGTGTACCCGATTATTGCAATTCCACAAGGAAAGTGGTCTGGCGGAGGATGAACCTGTTTTCAATCTCCGTCAATCAAGAGTCTTGCATTCTGCAGGAAAATGTATTCCTCCTAGTGTGGGAAGGGATTCTAAAAGTTCAAGTGCTGCAAAGACATTAAAGCCTTCATCAAAAAAAGCTTTTAGTCAAGAACAGAGTATGATGGGTTGGAAGAAAGATGTTATGCAACCTGAAAATCTTTTGCTTCCTGCTGATGACGACAATACAAAACACTTTGACTCTTCAGGCAGGGATCGAATGGCTTCTTGGAAGAAATTCCCATCTCCGTCAGGAAAAAGCCCTAAAGAAGCTGCTCAGCTGAAGGACCAAAATTATGGGAGAGTTGAATCTTCAAAGGCATCAAATAATAAGAGATTCCCTTCTGATGTGGATCTCTCTACCGCTAAGCCATCTGAGTTTCTTCCTATCAAAGATTCCTTGGATCATGCTTCCAAACACCAACATAAAGTTTCTTGGGGATACTGGGGAGATCAGCAGAATAATAGTGAGGAGAACTCGATAATTTGTCGTATATGTGAAGAGGAAGTTCCTACTTCACATGTTGAAGATCATTCAAGGATTTGTGCAGTTGCTGATAGATGTGATCAGAAGGGACTGAGTGTCAATGAGCGTCTTGTCAGAATTGCTGAAACACTAGAAAAGATGATGGAATCATGTTCACAAAAGGATTCCCAACAAATGGTGGGAAGTCCTGATGTTGCAAAAGTATCAAATTCTAGTATGACTGAAGAATCTGATGTTCCTTCTCCTAAACTTAGTGATTGGTCTCGCAGAGGCTCAGAGGACATGCTAGACTGTTTCCCTGAAACTGATAATTCTACTTTTATGGATGACCTAAAAGGATTACCACTTATATCATGTAAAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCAAGGTCACCATTGATGACACCACGAACAAGTCAGATTGACTTGCTCTTGGCAGGGAAGGGTGCTTATTCTGAACATGATGATCTGCTGCAGATGAATGAACTTGCTGATATAGCTCGATGTGTGGCAAATGCATCTCTGGATGATGATCGCACAACTTCATATTTATTATCTTGTCTTGATGACTTGCGGGTTGTTGTAGAACGAAGGAAATTTGATGCACTTACTGTGGAGACCTTTGGAACACGTATTGAGAAGCTGATACGAGAGAAGTATCTGCAGCTCACTGAGATGGTGGATGTTGAAAAGATAGATACAGAGAGCACAGTAGATGACGATGTTCTTTTGGAAGATGATGTGGTTCGTAGCTTGAGAACAAGTCCAATCCATTCGTCAAGGGATCGGACCTCTATTGATGACTTTGAAATTATAAAACCTATCAGTCGTGGGGCATTTGGAAGGGTTTTCTTGGCTAAAAAAAGAACAACTGGTGATCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAAAATGCTGTGGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTACGCAATCCTTTTGTGGTTCGGTTCTTCTATTCTTTTACATGTCGTGATAACTTATATCTTGTCATGGAGTATCTGAATGGAGGTGACCTGTATTCATTATTAAGGAATTTAGGTTGCCTAGATGAGGAAGTTGCCCGTGTATATATAGCTGAAGTGGTGCTTGCGTTAGAGTATTTGCATTCACTGCGTGTGGTTCATCGAGATCTGAAGCCTGACAATTTATTGATAGCACATGATGGTCACATCAAGTTAACAGACTTTGGGCTCTCTAAAGTTGGTCTCATCAACAGCACAGATGATCTGTCTGGGCCAGCAGTGAATGGGACATCCCTACTTGAAGAAGACGAGATTGATGTATTGACATCTGAAGATCAATGGGAAAGGAGGAAGAAACGCTCTGCTGTGGGCACGCCTGATTACTTAGCCCCAGAAATACTTTTGGGAACTGGACATGCGTATACTGCTGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTCAACGCAGAGCATCCTCAGAATATATTTGATAATATTCTTAATCGTAAGATACCTTGGCCTGCAGTTCCTGAAGAGATGAGTCCTGAAGCACAGGATCTTATTGATCGATTATTGACAGAAGATCCTAATCAAAGACTAGGATCAAAAGGTGCATCAGAGGTAAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACACTTGCCAGGCAGAAAGCTGCATTTGTTCCTGCTTCTGAGAGCGCTCTAGATACCAGTTACTTCACTAGTCGCTACTCATGGAATACTTCTGATGGCCTTGTATATCCAGCCAGTGATGTTGAGGATTCTAGTGATGCTGATAGCTTAAGTGGCAGCAGTAGTTGCTTGAGCAATCGCCAAGACGAAGTGGGAGATGAATGCGGGGGTCTTGCTGAGTTTGATTCTGGGGCATCTGTCAATTACTCTTTCAGTAATTTCTCCTTTAAGAATCTCTCCCAGCTTGCATCTATCAACTATGATCTCACTAAAGGATGGAAAGATGACCCGCCAACGAACTCTAGTGCATAG 3891 0.4557 MVFKGRFFSSKKSDSSSPDASSNSPRSFSSNSPSRSDKKKAKSAAHPTLAAGGSGGGALAACRQTQVKDGTKKKDVLKGKESQTPPPEPSKESPVKKLTAVEGRESSASASVSPILASSLGLNRIKTRSGPLPQESFFGFRGEKGTTALGGSNLSRPGVGVRGGDGKKKEAGSQNRVGFREGSRGGAVAAGGWGDNRNNSDSVSTSGSMPSREQSPVVLPRSRLQNGESSSEAAGNQASSWAQSGGLRSEDVCTPEAAYDFENPKESESPRFQAILRVTSAPRKRFPSDIKSFSHELNSKGVWPFPFLKPRRLNNLEEILVVIRAKFDKAKEDVNSDLAIFAADLVGILEKNADTHPEWQETIEDLLVLARSCAMTSSGEFWLQCESIVQELDDRRQDHPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDEPVFNLRQSRVLHSAGKCIPPSVGRDSKSSSAAKTLKPSSKKAFSQEQSMMGWKKDVMQPENLLLPADDDNTKHFDSSGRDRMASWKKFPSPSGKSPKEAAQLKDQNYGRVESSKASNNKRFPSDVDLSTAKPSEFLPIKDSLDHASKHQHKVSWGYWGDQQNNSEENSIICRICEEEVPTSHVEDHSRICAVADRCDQKGLSVNERLVRIAETLEKMMESCSQKDSQQMVGSPDVAKVSNSSMTEESDVPSPKLSDWSRRGSEDMLDCFPETDNSTFMDDLKGLPLISCKTRFGPKSDQGMTTSSAGSMTPRSPLMTPRTSQIDLLLAGKGAYSEHDDLLQMNELADIARCVANASLDDDRTTSYLLSCLDDLRVVVERRKFDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDTESTVDDDVLLEDDVVRSLRTSPIHSSRDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVNGTSLLEEDEIDVLTSEDQWERRKKRSAVGTPDYLAPEILLGTGHAYTADWWSVGVILFELLVGIPPFNAEHPQNIFDNILNRKIPWPAVPEEMSPEAQDLIDRLLTEDPNQRLGSKGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGLVYPASDVEDSSDADSLSGSSSCLSNRQDEVGDECGGLAEFDSGASVNYSFSNFSFKNLSQLASINYDLTKGWKDDPPTNSSA 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00344 1296 MobiDBLite consensus disorder prediction 1224 1241 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 9 32 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 457 480 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 1 249 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 540 558 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 1219 1242 - -
Phco5g00344 1296 FunFam probable serine/threonine protein kinase IREH1 883 972 - -
Phco5g00344 1296 PANTHER SERINE/THREONINE-PROTEIN KINASE 588 1268 - -
Phco5g00344 1296 ProSiteProfiles Protein kinase domain profile. 885 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00344 1296 Coils Coil 313 333 - -
Phco5g00344 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1004 1016 IPR008271 GO:0004672|GO:0006468
Phco5g00344 1296 MobiDBLite consensus disorder prediction 500 516 - -
Phco5g00344 1296 CDD STKc_MAST_like 891 1179 - -
Phco5g00344 1296 ProSiteProfiles AGC-kinase C-terminal domain profile. 1175 1279 IPR000961 GO:0004674|GO:0005524|GO:0006468
Phco5g00344 1296 SMART serkin_6 885 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00344 1296 MobiDBLite consensus disorder prediction 67 81 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 653 694 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 450 483 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 195 247 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 497 561 - -
Phco5g00344 1296 SUPERFAMILY Protein kinase-like (PK-like) 882 1213 IPR011009 -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 654 685 - -
Phco5g00344 1296 Gene3D Phosphorylase Kinase; domain 1 883 1203 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 104 125 - -
Phco5g00344 1296 Gene3D Transferase(Phosphotransferase) domain 1 969 1192 - -
Phco5g00344 1296 MobiDBLite consensus disorder prediction 729 751 - -
Phco5g00344 1296 Pfam Protein kinase domain 885 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00344 Phco-Chr5 2983529 2997139 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Phco5g00344 Pkinase 9.2e-66 CL0016