Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00316 ATGTGTGGGTGTGAAGGTGAAAATGTGAGTAGAGACAAAAATCCGTACAGTGGATATGCAGCAGAGAGAGAGAAGGTGTGGTTGGACAGCATAATAGACAGAGAAAAGGAGACCAAAAACCCTAGCCTTTTTCCTCTCATTGGCTCTACCAAAATGTGGATGGTGGGTGACAATGAAGGTGGTGACTTCAATATGGTTGATCATTCTTTCAGTGGAAGCAAACTCATGCCTCTCATGCCAAGGTCAATGACTTCTCTTAACACTGCACCACCAACAACCACTCTTAGCTTAACTCATCCCCATGGCAATCATTTCCCTTCACAATATGATTATCACCATCTTGCCTCCGTGGCTGAACAAAACAAGAGAGAGCAGTTCAATGGTACAGCACCCGTTGTGGTGAGTTCAAGGTGGAATCCAACCCGAGAGCAACTAAGAGCCCTTGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCCGCTGAGCAAATCCAACACATCACTGCACAACTTAGAAGATTTGGTAGCATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCCAGGGAAAGGCAAAAGCGTCGCCGCCAAATGGAATCAGATGCTGAAACTCCTGAGAAGAAAGATTCAGCTGCAAGTAGGGCCGAGTTTGAAGTTAAACAGACCAAGAATTGGACACCCTCAACAAACTGCAGTACTATTGCAGAGGAATCTGTTTCAACACAGAGGACTGCAAAAGCAGTGGCTGTAGAGAGTAGAACAGTTGGATGGCTCCAATTCGATGAAGGGGAATTACCACAAAGAAGAAACCTTTTGGAGAGGAATGCAACGTGGCATGTGATGCAGTTACCTTGTCCTTCTCCTGCTGCACCTGTCACACACCTCATAAACAGCCCTCCTAATGCCTCTTCAGCTATTAGTATGGCCACTACAACAACCACAGTAACAACAAGAAAAATGGACCCAAACCTTATCAAGACACATGATCTCAGCTTTTTTATTTCACCCCAGAGGGAAAACAGTGTTATCTACTTAAGCAGCAGTAGTAGTACTACTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAATTTTTCCCATTAAGGAGTGGTGATGCTAGCAGTGACAACATGAGGGATAAAGAGACAGACATATCAGCTTCAGCAATGAATTGCAATAACTTGACCCCAAGCCAGTTTTTTGAATTCCTTCCTATGAAGGAGTAA 1236 0.4401 MCGCEGENVSRDKNPYSGYAAEREKVWLDSIIDREKETKNPSLFPLIGSTKMWMVGDNEGGDFNMVDHSFSGSKLMPLMPRSMTSLNTAPPTTTLSLTHPHGNHFPSQYDYHHLASVAEQNKREQFNGTAPVVVSSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGSIEGKNVFYWFQNHKARERQKRRRQMESDAETPEKKDSAASRAEFEVKQTKNWTPSTNCSTIAEESVSTQRTAKAVAVESRTVGWLQFDEGELPQRRNLLERNATWHVMQLPCPSPAAPVTHLINSPPNASSAISMATTTTTVTTRKMDPNLIKTHDLSFFISPQRENSVIYLSSSSSTTEDDNCVESQTLQFFPLRSGDASSDNMRDKETDISASAMNCNNLTPSQFFEFLPMKE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00316 411 CDD homeodomain 137 197 IPR001356 GO:0003677
Phco5g00316 411 ProSiteProfiles 'Homeobox' domain profile. 141 196 IPR001356 GO:0003677
Phco5g00316 411 MobiDBLite consensus disorder prediction 193 231 - -
Phco5g00316 411 MobiDBLite consensus disorder prediction 197 219 - -
Phco5g00316 411 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 119 406 IPR044555 GO:0003700|GO:0099402
Phco5g00316 411 FunFam WUSCHEL-related homeobox 4 135 202 - -
Phco5g00316 411 Gene3D - 134 195 - -
Phco5g00316 411 SUPERFAMILY Homeodomain-like 136 201 IPR009057 -
Phco5g00316 411 SMART HOX_1 133 200 IPR001356 GO:0003677
Phco5g00316 411 Pfam Homeodomain 136 195 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00316 Phco-Chr5 2656404 2659506 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco5g00316 Homeodomain 7.1e-19 CL0123