Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00257 ATGGATGATGATCATGATCATATCCATATTTACATTATGTGTTGGCTATTGTTAATCACTTTGCCACACTCTCACTGTCAATCATCTGCCACTTTTGATTATGCAGTTTGTAAGAAGCAGTCTTACAACTGTGGAAATCTGTCCAACATCTTCTATCCTTTCTGGGGACACAACCGATCTCCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATGATCATAACACTACTTCAATTCGAATTGCCTCACAAAACTTCACAGTGAAGGAGATCAACACCAGTTCTCACACCATGAAACTGGTGCCAGTAGAAACTGTTGCCAATATCTGTTCTCCGGGATCTGAGGATGGGAATGAGAGTCACACTGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTACTGTCCCCGCATCAAAAATTTCCCTTATGGATACTTTATGTGTGGAGAAGATGCTATCACTTATTTTGCACTAGAATATGATAGTTTGTCCATTGATTATCCACAACTTCAAAGGGAGAATTTGTTGGATTCACTGTCAAAAGAAGTTGAACAGTTTGGCAAAGAAACCTATATAATGGATGATGATCATGATCATATCCATATTTACATTATGTGTTGGCTATTGTTAATCACTTTGCCACACTCTCACTGTCAATCATCTGCCACTTTTGATTATGCAGTTTGTAAGAAGCAGTCTTACAACTGTGGAAATCTGTCCAACATCTTCTATCCTTTCTGGGGACACAACCGATCTCCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATGATCATAACACTACTTCAATTCGAATTGCCTCACAAAACTTCACAGTGAAGGAGATCAACACCAGTTCTCACACCATGAAACTGGTGCCAGCAGAAACTGTTGCCAATATCTGTTCTCCGGGATCTGAGGATGGGAATGAGAGTCACACTGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTACTGTCCCCGCATCAAAAATTTCCCTTATGGATACTTTATGTGTGGAGAAGATGCTATCACTTATTTTGCACTAGAATATGATAGTTTGTCCATTGATTATCCACAACTTCAAAGGTGCAAGCAAATTTTACACACATGGAGTGATGCCCAAATGGATTTTTCTGGTGGAGCTCTTGCTTTGGAAAAAAAACTGAATGAAGGGTTTGTGGTGAAGTATAATGTTTCTGAAACTTGCGCAAGATGCTTGGGAAGTGAAGGGCGTTGCTGGAGAGATGGTATTATGAAACATGCAGTGAATTCATGCTACTATTATCTCCAGCATAAACCAAAAGTAACAGGGAGAATTTTTTGTAAGAAGCAGTCTTACAACTGTGGAAATCTGTCCAACATCTTCTATCCTTTCTGGGGACACAACCGATCTCCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATGATCATAACACTACTTCAATTCGAATTGCCTCACAAAACTTCACAGTGAAGGAGATCAACACCAGTTCTCACACCATGAAACTGGTGCCAGCAGAAACTGTTGCCAATATCTGTTCTCCGGGATCTGAGGATGGGAATGAGAGTCACACTGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTACTGTCCCCGCATCAAAAATTTCCCTTATGGATACTTTATGTGTGGAGAAGATGCTATCACTTATTTTGCACTAGAATATGATAGTTTGTCCATTGATTATCCACAACTTCAAAGGGAGAATTTGTTGGATTCACTGTCAAAAGAAGTTGAACAGTTTGGCAAAGAAACCTATATAATGGATGATGATCATGATCATATCCATATTTACATTATGTGTTGGCTATTGTTAATCACTTTGCCACACTCTCACTGTCAATCATCTGCCACTTTTGATTATGCAGTTTGTAAGAAGCAGTCTTACAACTGTGGAAATCTGTCCAACATCTTCTATCCTTTCTGGGGACACAACCGATCTCCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATGATCATAACACTACTTCAATTCGAATTGCCTCACAAAACTTCACAGTGAAGGAGATCAACACCAGTTCTCACACCATGAAACTGGTGCCAGCAGAAACTGTTGCCAATATCTGTTCTCCGGGATCTGAGGATGGGAATGAGAGTCACACTGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTCTACTACTGTCCCCGCATCAAAAATTTCCCTTATGGATACTTTATGTGTGGAGAAGATGCTATCACTTATTTTGCACTAGAATATGATAGTTTGTCCATTGATTATCCACAACTTCAAAGGTGCAAGCAAATTTTACACACATGGAGTGATGCCCAAATGGATTTTTCTGGTGGAGCTCTTGCTTTGGAAAAAAAACTGAATGAAGGGTTTGTGGTGAAGTATAATGTTTCTGAAACTTGCGCAAGATGCTTGGGAAGTGAAGGGCGTTGCTGGAGAGATGGTATTATGAAACATGCAGTGAATTCATGCTACTATTGCCCCAATGGATCTCATGGCCTGCACTGTTCTCCGAAAACCATTACAAACAGTGTTACAGGTGCAGCCGTTGCAATTGTGTTGATATGTATAGCCATTTTCTGTCTAAGATACAAGTCACCAATCTTGCAAAGACAGTTTGGGTTGACTTCAAAAATTAATGGAAATATTGAAGCGTTCCTTAAAAATCATGGAGCTCAAACTCTAAAAAGATACAAATTTTCAGAAGTCAAGAAAATGACCAAATCCTTCAAAGTTAAACTAGGTGAAGGTAGTTTTGGTGCTGTATACAAAGGAGAGACAATGAATGGTTGCCCTGTGGCCATAAAGAAATTGAATGCAAAAAAAGGAAATGATGAAAACTTTATCAACGAAGTTGCTAGTATTAGTAGAACTTCTCATATTAATGTTGTTCAACTTCATGGATTCTGTTTGGAAGGCAACAATAAAATTCTCATTTATGAATTTATGTCTAATGGTTCTCTTGACAAGTTTATTTATAATAAGGAACTCAAAGTCATTCCATTGTTGAGTTGGGATAATTTGTGGCAAATTGCTAAAGGGATAGCTCAAGGACTAGCCTACTTGCATAAAGGATGCAATACTCGCATTTTACATTTTGACATAAAACCATACAACATACTTTTGGATGAAAATCTTTGTCCCAAAATATTAGATTTTGAACTAGTAAAACTTTGTCCCACGACAGAGAGTACTATTTTTATGTCAGATCAAAGAGGAACAATAGGATATAAAGCTCCGGAAGTATGGAATAGACATCTCGGTGGAGTTTCACACAAATATGATGTTTATAGTTATGGAATGATGTTGTTAGAAATGGTGGGAGGGAGAAAAAATATTTATGTAGAAGCCAATCACATAAGTGAAATATACTTTTCACATTGGGCATACAACAGGCTAAAACAGGGTGGAGAATTGAGACATGATGGGGTCATAACCACAGAAGAACATGAAATAGCAAGGATAATGACTATAGTGGGATTATGGTGTGTTCAAATGATTCCACATGATAGACCTACAATGAGTAGAGTGATAGATATGCTAGAAGGTAACATGGATTCTTTGGAAATGCCTCCAAAACCTGCTCTTTCTTCTCCCATTAGTTGGAATAACTTTACATGCAAGAATGATAGAACTCAGTTTGGTGTCTATGCTGAGATGACATATGAGTTGTTGGCGAAGTTTTCTGAGCTTGAGAGATGCGAGCTTCGTATCCATGTGTTGGTTTCCATACAATTTTCTTTGGAGTCTGATGGTGGAATAAACTCACTGAAAGAAGCTGCTTTTCGTGGTTTGACGTTTATTATAACGTTAATGATGATAAAAAGTGCACGACTTGCAAAGAAAGTAAAGGAGTTTGCGGATCTATGGACATTTCTAAGAATCAGTTTGCATGTCACTGTTCGGATGGATCAGATGTGTCACTGTTCGGATGAATTGGTTTGGGGGTTTTCTCTGGCTTCAATCGCTATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAATTCGCAACCTGAGCTGGCCGATTGGTACAATTCGCTCGCGGATCTGTATCAGAAGAAGCTATGGCATCAGCTCACCCTCAAACTCGAGCAGTTTGTCGCACTCGCTGTTTTTCAGGCCGGTGATGCACTGATTCAATTATATCACAATTTCATCACAGACTTTGAGACTAAAATCAACCTTCTGAAGCTTGCACATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAAGAAGCGGCAATTGGTTATCTTGGAGCAGTCATTGAGAAACTGCAAGCTACCAGAGAACAGCGCATAGAAGAACCTATCCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAGAAGGAAAGCAAGAAACTCCTAGAAGATGGGAAGACTACACTTGACAGCATGACGGATATTGATCCATCTGTATATGCTAACTATTACTGGGTATCATCTCAATTTCACAAGACCCGCCAAGAATTTGCAGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGGGTCTCTATCAGAATCATTCAAGCTGGATTTAGCTTTTGATTTGTCTCTCTCTGCCCTTCTTGGGGACAACATCTACAACTTTGGAGAGTTACTTGCCCATCCTATAATCAAGAGCCTTCTAGGGACAAAAGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGCGATTTAGTACGATATCAAGAATTGTGCCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTGGTTCAAAATGAACAGAAGTTGTTGGAAAAAATCAACATTCTCTGCCTGATGGAGATTATATTCAGTCGGCCTTCAGAAGATCGAACTATTCCCTTGAGTGTAATAGCTGAGCGTACAAAACTTTCTATAGAAAATGTGGAACATCTCCTGATGAAGAGCTTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCACATTTCCTGGGTGCAACCAAGAGTTTTGGGTATTCAACAGATCAAATCATTAAGGGATAGACTTGACAGTTGGACAGGGAAAGTACACACTGCATTGTTGTCCATCGAGGCAGAAACACCTGATCTAATCGGATCGTGA 5241 0.3971 MDDDHDHIHIYIMCWLLLITLPHSHCQSSATFDYAVCKKQSYNCGNLSNIFYPFWGHNRSPECGSGDPFKLTCNDHNTTSIRIASQNFTVKEINTSSHTMKLVPVETVANICSPGSEDGNESHTGLFQDSPSVQKITIFYYCPRIKNFPYGYFMCGEDAITYFALEYDSLSIDYPQLQRENLLDSLSKEVEQFGKETYIMDDDHDHIHIYIMCWLLLITLPHSHCQSSATFDYAVCKKQSYNCGNLSNIFYPFWGHNRSPECGSGDPFKLTCNDHNTTSIRIASQNFTVKEINTSSHTMKLVPAETVANICSPGSEDGNESHTGLFQDSPSVQKITIFYYCPRIKNFPYGYFMCGEDAITYFALEYDSLSIDYPQLQRCKQILHTWSDAQMDFSGGALALEKKLNEGFVVKYNVSETCARCLGSEGRCWRDGIMKHAVNSCYYYLQHKPKVTGRIFCKKQSYNCGNLSNIFYPFWGHNRSPECGSGDPFKLTCNDHNTTSIRIASQNFTVKEINTSSHTMKLVPAETVANICSPGSEDGNESHTGLFQDSPSVQKITIFYYCPRIKNFPYGYFMCGEDAITYFALEYDSLSIDYPQLQRENLLDSLSKEVEQFGKETYIMDDDHDHIHIYIMCWLLLITLPHSHCQSSATFDYAVCKKQSYNCGNLSNIFYPFWGHNRSPECGSGDPFKLTCNDHNTTSIRIASQNFTVKEINTSSHTMKLVPAETVANICSPGSEDGNESHTGLFQDSPSVQKITIFYYCPRIKNFPYGYFMCGEDAITYFALEYDSLSIDYPQLQRCKQILHTWSDAQMDFSGGALALEKKLNEGFVVKYNVSETCARCLGSEGRCWRDGIMKHAVNSCYYCPNGSHGLHCSPKTITNSVTGAAVAIVLICIAIFCLRYKSPILQRQFGLTSKINGNIEAFLKNHGAQTLKRYKFSEVKKMTKSFKVKLGEGSFGAVYKGETMNGCPVAIKKLNAKKGNDENFINEVASISRTSHINVVQLHGFCLEGNNKILIYEFMSNGSLDKFIYNKELKVIPLLSWDNLWQIAKGIAQGLAYLHKGCNTRILHFDIKPYNILLDENLCPKILDFELVKLCPTTESTIFMSDQRGTIGYKAPEVWNRHLGGVSHKYDVYSYGMMLLEMVGGRKNIYVEANHISEIYFSHWAYNRLKQGGELRHDGVITTEEHEIARIMTIVGLWCVQMIPHDRPTMSRVIDMLEGNMDSLEMPPKPALSSPISWNNFTCKNDRTQFGVYAEMTYELLAKFSELERCELRIHVLVSIQFSLESDGGINSLKEAAFRGLTFIITLMMIKSARLAKKVKEFADLWTFLRISLHVTVRMDQMCHCSDELVWGFSLASIAMAALQYLESLRNSQPELADWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAIGYLGAVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKESKKLLEDGKTTLDSMTDIDPSVYANYYWVSSQFHKTRQEFAEFYKSALLYLAYTSVGSLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHISWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 1746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00257 1746 SUPERFAMILY "Winged helix" DNA-binding domain 1636 1708 IPR036390 -
Phco5g00257 1746 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 1534 1733 - -
Phco5g00257 1746 ProSitePatterns Protein kinases ATP-binding region signature. 951 974 IPR017441 GO:0005524
Phco5g00257 1746 SUPERFAMILY Protein kinase-like (PK-like) 930 1219 IPR011009 -
Phco5g00257 1746 Pfam Wall-associated receptor kinase galacturonan-binding 37 103 IPR025287 GO:0030247
Phco5g00257 1746 Pfam Wall-associated receptor kinase galacturonan-binding 656 722 IPR025287 GO:0030247
Phco5g00257 1746 Pfam Wall-associated receptor kinase galacturonan-binding 236 302 IPR025287 GO:0030247
Phco5g00257 1746 Pfam Wall-associated receptor kinase galacturonan-binding 457 523 IPR025287 GO:0030247
Phco5g00257 1746 ProSiteProfiles Protein kinase domain profile. 945 1225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00257 1746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1067 1079 IPR008271 GO:0004672|GO:0006468
Phco5g00257 1746 SMART serkin_6 945 1225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00257 1746 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1632 1725 IPR000717 -
Phco5g00257 1746 Pfam Wall-associated receptor kinase C-terminal 393 431 IPR032872 -
Phco5g00257 1746 Pfam Wall-associated receptor kinase C-terminal 813 862 IPR032872 -
Phco5g00257 1746 ProSiteProfiles PCI domain profile. 1534 1707 IPR000717 -
Phco5g00257 1746 Gene3D Transferase(Phosphotransferase) domain 1 1020 1228 - -
Phco5g00257 1746 Gene3D Phosphorylase Kinase; domain 1 921 1019 - -
Phco5g00257 1746 FunFam PR5-like receptor kinase 1020 1230 - -
Phco5g00257 1746 Pfam PCI domain 1598 1703 IPR000717 -
Phco5g00257 1746 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1364 1744 IPR035298 -
Phco5g00257 1746 Pfam Protein kinase domain 948 1214 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00257 Phco-Chr5 2118769 2136776 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco5g00257 Pkinase 4e-41 CL0016