Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00250 ATGACCTTATTCTCCTGGTTGTGCCCATGTTTCAGGAAGGACGGCGCAACCTCCGACGCCGGCGGCGACCACCACGAAGATCCCAACGGGCCGGGGGACTCCTTGGACATGATCTTCGACCTCCACACTCTCCAACTCGCTACCAACTTCTTCAGCAGCCTCAACCAGCTAGGTCATGGAGGCTTTGGTCCTGTCTTCAAGGGAATGATGCCAAATGGTCAAGAAGTAGCGGTTAAGAAGCTGTCATTGCAATCTAGACAAGGAGTTAAAGAATTCACCAACGAAGTCATGCTATTATTCAGAATTCAGCACAAGAACTTGGTTACATTACTTGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTCTATGAGTATCTACCTAACAAAAGCCTTGATCACTTTCTGTTTGATAAGAGGAAGTCTTCATCTTTGGAATGGGCAAAACGATTCAGAATAGTTACTGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCAGAAAGAATTATACATAGGGACATTAAAGCTAGTAACATATTATTGGATGACAAGTTAGTTCCGAAAATTTCAGACTTTGGTTTGGCAAGGCTGTTTCCTGGGGAGGACACTCACTTGCAGACATTTAAGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCGTTGCGAGGTTATCTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTCCTGATCTTGGAAATAGTTAGTGGGAGAAAAAACCAAGATATGCGACTTGGGCCAGAAAAAGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGGAGGGAGGATAATGGAATTGATTGATCCAAGCCTCGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGCCAATCAAGCATAATTGAAAGACCTGACATGAATGCTGTTCATCTCATGCTCTCAAGTGATTCGTTCACTTTGCCAAGACCAGGTAAACCAGGAATTCAAGGTCGAGCAGGACATTGGACTACAACTACATCTTCTGCTTTGACCAATACCAATCCTAGTAATACTACCAGGGCCTCAGGTGGTAGTGGTAGCTTTATAGAGGATTATTCTAGAAATTCTATATCTACCTCTTCTTTCGATGAAGGCAGATGA 1164 0.4442 MTLFSWLCPCFRKDGATSDAGGDHHEDPNGPGDSLDMIFDLHTLQLATNFFSSLNQLGHGGFGPVFKGMMPNGQEVAVKKLSLQSRQGVKEFTNEVMLLFRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKRKSSSLEWAKRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDKLVPKISDFGLARLFPGEDTHLQTFKISGTHGYMAPEYALRGYLSVKTDVFSYGVLILEIVSGRKNQDMRLGPEKADLLSYAWSLYQGGRIMELIDPSLGKYNGDEAAMCIQLGLLCCQSSIIERPDMNAVHLMLSSDSFTLPRPGKPGIQGRAGHWTTTTSSALTNTNPSNTTRASGGSGSFIEDYSRNSISTSSFDEGR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00250 387 MobiDBLite consensus disorder prediction 330 373 - -
Phco5g00250 387 FunFam Cysteine-rich receptor-like protein kinase 41 127 327 - -
Phco5g00250 387 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Phco5g00250 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Phco5g00250 387 SMART serkin_6 51 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00250 387 CDD STKc_IRAK 57 321 - -
Phco5g00250 387 Pfam Protein tyrosine and serine/threonine kinase 54 252 IPR001245 GO:0004672|GO:0006468
Phco5g00250 387 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00250 387 MobiDBLite consensus disorder prediction 340 373 - -
Phco5g00250 387 FunFam Cysteine-rich receptor-like protein kinase 2 29 126 - -
Phco5g00250 387 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 353 - -
Phco5g00250 387 SUPERFAMILY Protein kinase-like (PK-like) 36 321 IPR011009 -
Phco5g00250 387 Gene3D Phosphorylase Kinase; domain 1 29 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00250 Phco-Chr5 2043866 2047138 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco5g00250 PK_Tyr_Ser-Thr 3.9e-45 CL0016