Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00241 ATGGGTGAAGGAATATCAGAAGCTGCTGCTGCTGCTGGTTTCATCAATCTGATGGAGGAAAATCTGCCTCCTGGATTCAGGTTTCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAACAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTTGCTGATCTCAACAAATCTGAACCTTGGGACCTACCAGGTAAGGCCTCCATGGGAGAAAAAGAATGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCCACAGAATCAGGTTACTGGAAAACAACAGGGAAAGACAAGGAAATTTTTGGTACTGGTGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTCTATAGGGGTAGAGCTCCAAGAGGAGAGAAAAGTAATTGGGTCATGCACGAATATAGACTGGAAAACAAGCATCACTTAAGACCTTCCAAGAATGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAGTTTACAAGTGAAGAAACCACAGCAAACAAACTCATCACGACCAGAGTCCCCATGTGACACAGTCTCTATGGTCAATGAATTTGGTGACTTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCCTCAGGTGGACTCACTAACAATATTTCAGGGCACACTTTTTTCAATGCTGATCTCAGTAATAGTGCTAACACAAACATGAACTTGGCCATGAATTGGCCAGTTGCAAGTGAGGTTCAGGTTCCCTCTCTTCCATCCCTACCATGGCCTTCTGGTTTGCTAAGTCCAAGTATTTCCGTAAATTCTTTGCTTCTCAAGGCATTGCAGCTTAGGAGTTATCAACAAAGAGAAGCAGCAGTAGCTGCAGATCATCTTGCATCATATATGGCTCAAGGAGTTTGCCAAGTTGTTGAAACTGACCTAAGTTCAAATCTGACAGCTTCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAGCAACAACAACAGGAGCAACCATTCAATTTTCCATTTGGTGAATCTGTCTAA 1035 0.4203 MGEGISEAAAAAGFINLMEENLPPGFRFHPTDEELITCYLTNKVSDSSFTSKAIAVADLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFGTGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKNEWVVCRVFQKSLQVKKPQQTNSSRPESPCDTVSMVNEFGDFELPNLNSIANSSGGLTNNISGHTFFNADLSNSANTNMNLAMNWPVASEVQVPSLPSLPWPSGLLSPSISVNSLLLKALQLRSYQQREAAVAADHLASYMAQGVCQVVETDLSSNLTASSSKVQECMPQQQQQQEQPFNFPFGESV 344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00241 344 FunFam NAC domain-containing protein 100-like 31 172 - -
Phco5g00241 344 Gene3D NAC domain 31 172 IPR036093 GO:0003677|GO:0006355
Phco5g00241 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 283 - -
Phco5g00241 344 ProSiteProfiles NAC domain profile. 22 168 IPR003441 GO:0003677|GO:0006355
Phco5g00241 344 Pfam No apical meristem (NAM) protein 23 147 IPR003441 GO:0003677|GO:0006355
Phco5g00241 344 SUPERFAMILY NAC domain 16 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco5g00241 Phco-Chr5 1973086 1975467 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g00241 NAM 1.2e-39 No_clan