Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00234 ATGAACAACGAAATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCACGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCGGCGAACCAATTAGCAAGCAGGCACCAAAGGGTAAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGCCACCCTTAATCATAACAAAAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCACGCCACAACAGCAAGCACGTATCGGTGCAGCTACAAGAGCAACAAAAGAAAATACATGAAGAAGGAGAAGAAGAAGAAGAAGAACAAGTATTTTTCAATAACACCATTAGTCTTCCCCTTGTGCCTGAGCTTGGAAGTGAAGAAGCACTGTATAATGATGAGAGTGAGGAGCAACTATTGTGCCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTATATACAATGAAGTGAAGGAAGAGGTTTTAGCTGGTGAAGAAGTCTTTGACTTAGAAAATTTTTCTTCCGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGAAACGGAGCTGATGAGGATTCATCTGAGCACGTGAAAGGATCAGAACTTGTGCTTGATTGCAAAGAAGAAGATGATGAAATGGATGCATGTGTTGATGGAGTTGGAGAAAAAGATGCAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATGCTGACACACCTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGATGCCTTTAATTGGAATGAGATTGTTGAGTCAGAATCACTTGCTCAGGAACTGGATGAAGAGGCAAGTACAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGACGTTATTACTGCTTGGGCCAGTCAAGGTTCTCCATGGACAACAGGAACCCCACCTAACTTCAACTCTGATGATTTCTTGCCAGATTTCTGGGGTTCGAATGGTGGGGATGTTGAATGCTGTTATGGGGAAATGAGAAGTTTAAGAGGGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGATTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAACGCAGAGAAAAGACCAAGAATGAAAGGTCGATTTGTGAAGAGAACATCATTTCTTGGAGCCACTGTTTTGCCAGCTTAG 1272 0.4332 MNNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHQRVKLQTASSKVNYSATLNHNKKVAWHSGFTRKARTPRHNSKHVSVQLQEQQKKIHEEGEEEEEEQVFFNNTISLPLVPELGSEEALYNDESEEQLLCRVPVFDAELCSIYNEVKEEVLAGEEVFDLENFSSEFLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSELVLDCKEEDDEMDACVDGVGEKDAMVKVKDEEELDADTPCHLDSIILDMNSDAFNWNEIVESESLAQELDEEASTVGTNKKDIFLRLNYEDVITAWASQGSPWTTGTPPNFNSDDFLPDFWGSNGGDVECCYGEMRSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFLGATVLPA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00234 423 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Phco5g00234 423 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Phco5g00234 423 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Phco5g00234 423 Coils Coil 101 122 - -
Phco5g00234 423 CDD Bbox1_BBX-like 18 59 - -
Phco5g00234 423 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 414 - -
Phco5g00234 423 SMART bboxneu5 14 61 IPR000315 GO:0008270
Phco5g00234 423 Pfam CCT motif 370 412 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00234 Phco-Chr5 1921084 1923389 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco5g00234 zf-B_box 4.3e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03587 4 55793631 55795060 Phco5g00234 5 1921084 1923389 PCT