Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00185 ATGCAAACGCAAATAGAACGTTCCAGATACTCACTCCGCCACCCTTATAAAGCCCGCCATTACTCTACCCCGTTTACATTGCACACCGTTCGTTTCTTCAAGACAGTAATCAAGTATCGCAGTTCCGTTTCTTGCACGATGCCGAGTCGATCAACGGGAACCATAACACAAGACTGGGATCCCGTCGTTCTGCACAGGGCCAAGCCCAAGGCGCAGGACCTCCGTAACCCCAAGGCCGTCAACCAGGCGCTCCGGTCCGGCGCGGAGGTGCTTACGGTAAAGAAGTTCGACGCCGGTTCGAACCGGAAGGCCGGCGGTCCGGCTGTGAACGTGAGGAAGCTAGAGGAGGGGACGGAGCCAGCGGCGTTGGAGCGTGTGGCGGGAGAGGTCCGGCACGCGATCCAGAAGGCGCGTTTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCAGATCAACGAGCGAACGCAGGTAGTGCAGGAGTACGAAAATGGCAAAGCAGTGCCTAACCAGGCCGTGCTGGCCAAGATTGAGAGGGTTCTCGGTGTCAAGCTCAGGGGCAAAATCGGAAAGTGA 576 0.5781 MQTQIERSRYSLRHPYKARHYSTPFTLHTVRFFKTVIKYRSSVSCTMPSRSTGTITQDWDPVVLHRAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGGPAVNVRKLEEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKIERVLGVKLRGKIGK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00185 191 ProSiteProfiles Cro/C1-type HTH domain profile. 134 188 IPR001387 -
Phco5g00185 191 FunFam Multiprotein bridging factor 1 118 191 - -
Phco5g00185 191 SUPERFAMILY lambda repressor-like DNA-binding domains 131 185 IPR010982 GO:0003677
Phco5g00185 191 Coils Coil 134 156 - -
Phco5g00185 191 Gene3D - 117 191 IPR010982 GO:0003677
Phco5g00185 191 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 57 188 - -
Phco5g00185 191 Pfam Multiprotein bridging factor 1 57 126 IPR013729 -
Phco5g00185 191 Pfam Helix-turn-helix 134 185 IPR001387 -
Phco5g00185 191 SMART mbf_short4 133 188 IPR001387 -
Phco5g00185 191 CDD HTH_XRE 133 185 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00185 Phco-Chr5 1435569 1436144 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Phco5g00185 MBF1 9.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00185 5 1435569 1436144 Phco5g00185 5 1435569 1436144 ECH