Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00169 ATGGAACACAACATCACCAGCAACACCAACAACGGGATCGCACCGTTTGTCATAAAAACCTACAGCATGGTTAACGATCCCACCACCGATAAACTTATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTCCTCGATCCCCTCGACTTCTCCCACTCACTGCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGCTTTCAGAAAGGTGGACCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGCTGAGGAACATCGTACGGCGGAAGCACGGCGGAGGGAGGAGCAACAATTCGCAATCGCATTTGCATCCCCTGAAGTTTGAGGAGTTGGACGGTGATGCTATGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAAGCTTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAACAAATGATGGCTTTTCTGTCAAAGGTCGTGGAAGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAACAAAAACACCTCGGCGAGAAAAAGCGACGCCTACTCATTCCTCCGCCTTCGACGGCGGCGACCTCCTCCTCCTCCTCCTCCGGCATCAAGACGGAGTTCGAAGAAGACGAAGGTAACATCATGTCTTCATCGCCGGAGACGGGTTTGGAAATCGATAATAATAATATTATTTGTTCGCCGGTGACGGCGGGGTATTGGGGGGAACAAGGGTGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTGACGGTGGTGACGCCGGCTGCACCGGCGATGGGTGGAGGATATTTGGGGCGTGGGAGTTTGTTTGGGGAAATGGCGGCGGAGGGGAGTGCGCTGCCGCCTTATCCGTTTTCGCTGTTGGAAGGTGGGTTTTAG 948 0.5348 MEHNITSNTNNGIAPFVIKTYSMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYAFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSNNSQSHLHPLKFEELDGDAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREQKHLGEKKRRLLIPPPSTAATSSSSSSGIKTEFEEDEGNIMSSSPETGLEIDNNNIICSPVTAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSLFGEMAAEGSALPPYPFSLLEGGF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00169 315 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00169 315 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
Phco5g00169 315 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00169 315 Gene3D - 8 106 IPR036388 -
Phco5g00169 315 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00169 315 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00169 315 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00169 315 Coils Coil 129 163 - -
Phco5g00169 315 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 229 IPR027725 -
Phco5g00169 315 MobiDBLite consensus disorder prediction 192 235 - -
Phco5g00169 315 FunFam Heat shock transcription factor 1 9 106 - -
Phco5g00169 315 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00169 Phco-Chr5 1307576 1308995 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco5g00169 HSF_DNA-bind 4.1e-29 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00169 5 1307576 1308995 Phco5g00169 5 1307576 1308995 ECH