Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00161 ATGTCAACAGCTCCAGCGCCGTCTTCGCCGACGTTCAACAGCACCGCGCCTCCGCCGCCGTCCAACAGCACCGCGCCTTCGCCGCCGTCCAACAGCACCTCGCCTCCGCCGCCGTCCACTCCCGCGGCACCACCGCCCTCCACACCTTCCGCGCCGCCTCCAGCAACTCCCTCCGCGCCTCCGCCGGCGACACCTTCTTCTCCACCTCCGTCTACTCCGTCCTCTCCTCCACCGTCCACTCCTTCGGCTCCAACCCCGCCGTCGAGCAATCCACCATCGAGCTCTCCACCCTCGCCTCCGTCGAGCTCTCCACCCTCGCCTCCGTCGGGCTCTCCTCCGTCGCCGCCGTCGGGTTCTCCACCATCGCCACCGAGTAGTGGCGGAGGTGGCAACACTCCGAGTCCACCGTCTCGGAGCTCGCCTTCTCCTCCGCCGCCGTCGTCTTCGTCGGGTGTTTCGACTGGCGTGGTGGTCGGAATCGCCGTGGGGGCCGTCGCGGTTCTTGTTGTGTTAAGCATTCTCTGCATATGCTGTAGGAAGAAGAAGAGAAGACGCGAGGAGGAGTACTATGCTCCGCCGCCGCAGCAACCGCTGCGGGGACCCAAAGATGATTATGGTGGTCCCCCACGTCAATGGCAACACAATGTTCCCCCTCCGCAGGATCATGTGGTTTCAGTGATGCCTCCAAAGCCATCGGTTCCACCGGCTCCGGCTTATGCTGCTCAAACTGCTCCTCCCCCGCCTCCTCAATTCACAAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAACCACTTCCTCCTCCTTCTCCAGGACTTTCATTGGGGTTCTCTAAGAGCACTTTTACCTACGAGGAGTTGGCACGCGCAACGGATGGATTCTCTGATGCGAACCTCCTTGGACAAGGTGGATTTGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAATTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAAGTTGAGATAATTAGCCGTGTTCATCACAAGCATCTTGTATCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCAAACAACACATTGGAGTTCCATTTGCATGGAAGAGGACGACCTACCATGGATTGGCCCACAAGACTAAGAATTGCCTTAGGATCTGCTAAGGGACTGGCATATCTTCACGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAGTCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCGAAGGTTGCAGATTTCGGTCTTGCCAAGTTTTCTTCTGATCTTAATACTCATGTTTCTACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTCCTTGAGTTAATAACTGGACGGCGACCAGTTGATAAAAATCAAACATTCATGGAGGATAGTTTGGTAGAATGGGCTAGACCTTTGCTCACACGAGCTTTGGAAGAGGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGACTATGACCCTAATGAGATGGCACGAATGGTGGCATGTGCTGCAGCTTCCACACGTCATTCGGCAAAGCGCAGACCTAGAATGAGCCAGGTTGTGCGTGCTCTGGAAGGAGACGTGTCTCTAGCAGATCTTAACGAAGGAATCAAACCTGGACATAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGTACAGTACAGGGAAGACATGAAAAAGTTCAGAAAAATGGCATTGGGAACTCAGGAATATGGTGCAAGCAGCGAATACAGTGCAGCTACAAGTGAGTATGGTTTAAACCCATCTGGCTCCAGCAGTGAAGCTCAGAGCCGCCAAGCCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 2004 0.5279 MSTAPAPSSPTFNSTAPPPPSNSTAPSPPSNSTSPPPPSTPAAPPPSTPSAPPPATPSAPPPATPSSPPPSTPSSPPPSTPSAPTPPSSNPPSSSPPSPPSSSPPSPPSGSPPSPPSGSPPSPPSSGGGGNTPSPPSRSSPSPPPPSSSSGVSTGVVVGIAVGAVAVLVVLSILCICCRKKKRRREEEYYAPPPQQPLRGPKDDYGGPPRQWQHNVPPPQDHVVSVMPPKPSVPPAPAYAAQTAPPPPPQFTSSGGSGSNYSGGEPLPPPSPGLSLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDLNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVEWARPLLTRALEEDDFDSIIDPRLQNDYDPNEMARMVACAAASTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTVQYREDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQATREMEMRKMKNSQGFSGSS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00161 667 PRINTS Proline rich extensin signature 57 82 - -
Phco5g00161 667 PRINTS Proline rich extensin signature 3 19 - -
Phco5g00161 667 PRINTS Proline rich extensin signature 25 42 - -
Phco5g00161 667 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 163 630 IPR047117 -
Phco5g00161 667 MobiDBLite consensus disorder prediction 11 148 - -
Phco5g00161 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Phco5g00161 667 FunFam proline-rich receptor-like protein kinase PERK1 273 370 - -
Phco5g00161 667 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00161 667 MobiDBLite consensus disorder prediction 222 252 - -
Phco5g00161 667 SMART serkin_6 295 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00161 667 MobiDBLite consensus disorder prediction 619 647 - -
Phco5g00161 667 FunFam Proline-rich receptor-like protein kinase PERK1 371 579 - -
Phco5g00161 667 SUPERFAMILY Protein kinase-like (PK-like) 270 568 IPR011009 -
Phco5g00161 667 MobiDBLite consensus disorder prediction 619 667 - -
Phco5g00161 667 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Phco5g00161 667 CDD STKc_IRAK 301 570 - -
Phco5g00161 667 Gene3D Phosphorylase Kinase; domain 1 275 370 - -
Phco5g00161 667 Gene3D Transferase(Phosphotransferase) domain 1 371 579 - -
Phco5g00161 667 Pfam Protein tyrosine and serine/threonine kinase 300 567 IPR001245 GO:0004672|GO:0006468
Phco5g00161 667 MobiDBLite consensus disorder prediction 184 275 - -
Phco5g00161 667 MobiDBLite consensus disorder prediction 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00161 Phco-Chr5 1216640 1220316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco5g00161 PK_Tyr_Ser-Thr 2.5e-44 CL0016