Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00141 ATGGATCCTCCGACCAAGAGTTGGAGCATCCACACGCGCTCCGAGATATCTGCCAAGTACGAGGTTATTGGTCGGGTCGGATCGGGTGCCTACGCCGACGTGTACGACGGACGGCGCCGCTCCGACGGTGCGGCGGTGGCGCTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCTCTGCGGGTCCTGAAAGGGTCTCAAAACGTGGTCGTTCTTCACGAGTTCTTCTGGCGTGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACTGACCTCGCCGCCGTGATCGGAAAAGGTGGTGTCGGCGTCGTTGAGGTTAAGAGGTGGATGTTGCAGGCTCTGAGTGCTGTGGATGAGTGCCACCGGAATATGATCGTGCATAGAGACTTAAAACCCGCGAATTTTTTGGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTTGTGGAGTCTGGATTCGATGGTCCCCAGGAAGATGATGATGTTTCAAATAGTGAAAGGTCACTCCAACAACATCGTGAAGCTATTTCCCAACTAGACAACTTAAATCAAACTGGGCAGGAAAACCCAGATCATAGAAGCTTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACCAAGAGCTACTCTTATGACACTGACAAGGAAGCGAATATCCATGATGGAAACACCTCATGTCTTGCAACGTGCACAGAGAGTGACATAGATGATGAACTTTGCAAAGGTTCTTTTACCTACGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACACGCTGGTTTCGAGCTCCTGAGTTACTATATGGATCCACAGATTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCAGAACTCTTAACATCGAAGCCATTGTTTCCAGGAACAAGTGATGTAGACCAGCTTAGCAGGATTGTTAGTGTTTTGGGGAACATCAATGAGGAAACTTGGCCTGGCTGTTCCAAACTTCCTGATTATGGAAATATCTCTTTTTTTAAGGTGGAAAACCCTAGTGGTCTTGAAGCATGCATGCCCAATTGCACCCCTGATGAAGTTTCCTTAGTCAAAAGATTGGTTTGTTATGATCCAATTAAGAGAGCCACAGCAATGGAGTTAGTTCAAGACAAGTACCTAAGTGAAGTACCACTTCCTGTTCCAATTTCTGAGTTGCGGGTTCCTTTGACTAGTATTGGACAAGACCAGGATCGCCCTGGAGGGTACAATGAAATGGGTTCTGATTCTGATTTGGATGAGTTTGGAACTTTGAATATCACCACAACTGATTCTGATCTATCTACACAAATCTCTTGA 1386 0.4704 MDPPTKSWSIHTRSEISAKYEVIGRVGSGAYADVYDGRRRSDGAAVALKEVHDSQSASREIEALRVLKGSQNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGKGGVGVVEVKRWMLQALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILVESGFDGPQEDDDVSNSERSLQQHREAISQLDNLNQTGQENPDHRSLSHEEYFRVLDEMKTKSYSYDTDKEANIHDGNTSCLATCTESDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIVSVLGNINEETWPGCSKLPDYGNISFFKVENPSGLEACMPNCTPDEVSLVKRLVCYDPIKRATAMELVQDKYLSEVPLPVPISELRVPLTSIGQDQDRPGGYNEMGSDSDLDEFGTLNITTTDSDLSTQIS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00141 461 PANTHER CELL DIVISION PROTEIN KINASE 19 409 - -
Phco5g00141 461 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00141 461 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Phco5g00141 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Phco5g00141 461 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00141 461 SUPERFAMILY Protein kinase-like (PK-like) 14 409 IPR011009 -
Phco5g00141 461 MobiDBLite consensus disorder prediction 443 461 - -
Phco5g00141 461 MobiDBLite consensus disorder prediction 420 461 - -
Phco5g00141 461 Pfam Protein kinase domain 20 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00141 461 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00141 461 FunFam Cyclin-dependent kinase F-1 11 105 - -
Phco5g00141 461 Coils Coil 174 194 - -
Phco5g00141 461 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Phco5g00141 461 Gene3D Transferase(Phosphotransferase) domain 1 108 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00141 Phco-Chr5 1086658 1088936 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Phco5g00141 Pkinase 1.5e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00141 5 1086658 1088936 Phco5g00141 5 1086658 1088936 ECH