Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00115 ATGTGTGTTAACATGGCACAATTAGAAAATTTGTTGGTAGTTTTGTTCCTCTCTGCTGTGGCATCTAGCATAGTCCTCGTAGATGCCAACTTTTCCAAAAGCATGTACATCACTTGGGGTTACCAACATGCATTATTGCAGGGTGAAGATCTCCAACTTGTGTTGGATCAAACCTCAGGATCTGCAGCTCAAACAAAGAAAGCATTCTTATTTGGAAGTATCGAATCACAAATCAAGTTGGTTCCTGGTAATTCTGCAGGAACAGTTACTGCCTACTATCTATCCTCTACAGGAAGCCAGCATGATGAGATAGATTTTGAGTTCTTAGGCAACATTTCAGGACAACCTTACATTGTCCATACAAACATATACACACTAGGAAATGGAAGCAGGGAGCAACAATTCTACCTCTGGTTTGACCCAACTGCTGATTTTCACAATTACACCATTCACTGGAACCCAACTGAAATTGTGTGGTACATTGATAGTATACCAATTAGGGTGTACCGAAATTATGAAAATGAGGGCATTGGTTTCCCAAACAAGCAAGGAATGAAGGTTTATACCAGTCTATGGAATGCAGATGATTGGGCTACTAGAGGTGGAATTGTTAAGACCAATTGGAGTGGTGCACCATTCATAGCTAGATTAAATCATTTTAGAGCAAGGGCTTGCAAGTGGAATGGAGCAATCAGCATCAACCAATGCTCCTTAAACATCCCTGGCAATTGGTGGAGTTCTCCCACATACAAGCAATTGAGTTATGCTCAATTGGGTCAGCTGAATTGGGTCAGAAACAATTACATGATCTATGACTATTGCAGAGATACCAAAAGATTCAATGCACAGATGCCTCCTGAATGCTTCAATTATTATTGTAAGAGTGATCAAGCATTTTGGGAGCAAGAGTGGAAGCATCATGGAACGTGCTCTAACCTGCAACAATTTGATTTCTTCACCTTGACCTTAGATATCTACGTAAGGAACAATCTGAAAGATATACTTAAAAATGCGGTGTCCTTTCAAGGCCATAGGGTGGTTTCCTTTGGTTTCGTTTTGGTTTTGGGTGTTGTTGCTTTGAGACCGAAGCGTGCGTTTGTTTGTATTGTTGTAGCAGCAGCGGTTGATAGGGTTAAGGCCATGGAGCGCATCATCGGCGCCAAGTTCAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAAATCGTCGCGGTCAAGATTGAGAACAGTGAAACGAAGCATCCGCAATTGCTTTACGAGGCTAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTAGACGGAGAGGATAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAGTTCTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGCTGACTAGAATTGAATATGTGCATTCTAAAGGATATCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGTAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACACCGCAACTCATCGCCACATTCCATACAGGGAAAACAAAAACTTAACAGGGACTGCACGCTATGCCAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGATATGTGCTTCTGTATTTTCTCAGAGGAAGCCTGCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAACTAGGAACTCCTATTGAGGATTTATGCAAATCTCATCCTGTTGAGTTTGCTTCATACTTTCATTATTGTCACTCTCTGATGTTTGATCAGCGACCTGATTATGTATTCTTGAAGCGCCTAATTCGGGATCGATTTGCTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTCCAGCCTCGCATGTCTACGGTCCCTGGAGCAAGCATCAGTCCTGCAATGCCAATGGATGTGGACAACAATCGAGGGGATGTCTCAGCCGAACACATTAAATCAGGCAATGTAACTGGTTCCGGTGTTAAAATTCAATTTAAATCACCTGGGATAAAAAATTTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCACATATACCCTGTACCTCATACTCTCTTGCTGGCACCTCAAAAAGGAACTCTTTGAAGCCTGCCTCGTCCACTGAAGCTGCCAACCCTGTAAATGGGCAAGGAAGTAATAAAATCGGCCCTTCAAGTAGCTGGATTTCATCTGTGCAACGCATATCTTCTGCCAAATGA 2421 0.4205 MCVNMAQLENLLVVLFLSAVASSIVLVDANFSKSMYITWGYQHALLQGEDLQLVLDQTSGSAAQTKKAFLFGSIESQIKLVPGNSAGTVTAYYLSSTGSQHDEIDFEFLGNISGQPYIVHTNIYTLGNGSREQQFYLWFDPTADFHNYTIHWNPTEIVWYIDSIPIRVYRNYENEGIGFPNKQGMKVYTSLWNADDWATRGGIVKTNWSGAPFIARLNHFRARACKWNGAISINQCSLNIPGNWWSSPTYKQLSYAQLGQLNWVRNNYMIYDYCRDTKRFNAQMPPECFNYYCKSDQAFWEQEWKHHGTCSNLQQFDFFTLTLDIYVRNNLKDILKNAVSFQGHRVVSFGFVLVLGVVALRPKRAFVCIVVAAAVDRVKAMERIIGAKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSETKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMLTRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDTATHRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKLGTPIEDLCKSHPVEFASYFHYCHSLMFDQRPDYVFLKRLIRDRFAREGYEFDYVFDWTILKYQQAQKNRVQPRMSTVPGASISPAMPMDVDNNRGDVSAEHIKSGNVTGSGVKIQFKSPGIKNLGSEKPLDKNIFGEAHIPCTSYSLAGTSKRNSLKPASSTEAANPVNGQGSNKIGPSSSWISSVQRISSAK 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00115 806 FunFam Casein kinase I isoform delta-like 381 720 - -
Phco5g00115 806 ProSitePatterns Protein kinases ATP-binding region signature. 395 418 IPR017441 GO:0005524
Phco5g00115 806 ProSiteProfiles Protein kinase domain profile. 389 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00115 806 FunFam Xyloglucan endotransglucosylase/hydrolase 18 290 - -
Phco5g00115 806 Gene3D Transferase(Phosphotransferase) domain 1 368 701 - -
Phco5g00115 806 SUPERFAMILY Ribonuclease Rh-like 267 338 IPR036430 GO:0003723|GO:0033897
Phco5g00115 806 Pfam Glycosyl hydrolases family 16 32 209 IPR000757 GO:0004553|GO:0005975
Phco5g00115 806 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 217 IPR000757 GO:0004553|GO:0005975
Phco5g00115 806 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 288 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Phco5g00115 806 CDD STKc_CK1_delta_epsilon 388 662 - -
Phco5g00115 806 ProSitePatterns Glycosyl hydrolases family 16 active sites. 103 113 IPR008263 GO:0004553|GO:0005975
Phco5g00115 806 SUPERFAMILY Protein kinase-like (PK-like) 385 670 IPR011009 -
Phco5g00115 806 Pfam Protein kinase domain 390 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00115 806 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 289 IPR013320 -
Phco5g00115 806 Pfam Ribonuclease T2 family 281 338 IPR001568 GO:0003723|GO:0033897
Phco5g00115 806 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 28 288 IPR044791 GO:0004553
Phco5g00115 806 MobiDBLite consensus disorder prediction 764 806 - -
Phco5g00115 806 SMART serkin_6 389 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00115 806 Gene3D - 17 291 - -
Phco5g00115 806 CDD GH16_XET 27 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco5g00115 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00115 Phco-Chr5 872308 881016 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Phco5g00115 Pkinase 5.9e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00115 5 872308 881016 Phco5g00115 5 872308 881016 ECH
Phco4g03531 4 55333114 55334532 Phco5g00115 5 872308 881016 PCT