Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00108 ATGGGTTGCATTTACTCCCGAGTCTGCATAGGCGACAACTGCAGAGGGTCCAGCATCAACGGAGACCCCATTAACAGAACCACCGAAGTAGGTGAAGTCGCCAATTTCTCACACACCTCTTCCGACGTCGAAGAAGGTGAAATCAGAGACCAGCTCAACCAATTGAGCATCACGCGAGACTCCGAAACCGGAATCCGAAGACTATCTAGGGTTTCAGCGCAGTTTCTGCCGCCGGATGGTTCGCGAATTGTAAAAGTACCTTCTGGAAACTTCGAATTGCGATACTCCTTCTTGTCTCAGCGAGGGTACTACCCCGATGCACTCGATAAAGCGAACCAGGACAGTTTCTGCATCCACACGCCTTTCGGTACGAACCCTAACGACCACTTTTTTGGAGTCTTCGACGGCCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTCGCGAAGCGGAAAGTGTGTGAGAATTTGCTCAGAAACTCCAAATTCCGTGGTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTGGCGACGAATTCGCAGCTTCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGGAGGACGATATACGTGGCGAATTCCGGCGATTCGAGGGCGGTGATTGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCGATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGAGTGAAGCTATGTGGGGCCAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGAACCCCGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCAAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACCAGGAGTATTGGGGATTCTATTGCGGAGACTATTGGGGTTGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGAGTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGCGCTGCAATTGTGGCAGAATCTTATCGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGAATCTACTGTTGGTCAGAGTCAGTCGGCTAGTTATGGTGATGTTTTCCGAAAACCTGTGCCACAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCATCGTGTAAGACATGATTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGTTTGGGTTCCTCCCCCTTCAGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAACAGGCATTGCATGATCATTTTCTCTTCCGAAAACTTACCGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAGGTCGAACCTGGGGATATTATAGTCAAACAGGGCGGTGAAGGTGACTGTTTTTATGTTGTTGGTAATGGAGAATTTGAGGTCTTGTCAACTCAGGAAGAAAAAGAAGGGGACGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCTTGTTTTGGAGAACTTGCTCTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGGGAAGATTTTCGTGGGATTTTAGTGTCAGAATTCTCTAACTTATCATCATTGAAGTTGCTTCGGTCTGTAGATCTCCTTTCGAGGTTATCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAATAATGAAATCCTTGCATTGTACATTATACAGAAGGGATGCGTAAAAATCACTTTTGATTCTGATTTATTGACGAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAACGAGGAGGAAGATGTTCAGAGCATAACAGAACTATCAATAGAGAAGCCTGAGGGAAGCTATTTTGGTGAATGGGTCCTTTATGGTGAACGTATTGGTTCCATAAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTCAAGGGATAATTCCAAGGAGTTGACTAGAAGAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACGCTATATTCCACTGACTGTTCCGAAATAGGGGTTGCAAATTTAAAAGAATCAGAGAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTTGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGGGCTCTTCAACTAGTATACCACAGGTTTTATGCACTTGTGCTGATCGCATGTATGCTGGAATACTGCTAAATACTCGCCTTGCTTGCCCTCTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCTGCACAGTTTTGTGCTGCATCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGAGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAACTACATCTTCCCGAGAGTTTCAGCTCTGAAACGGTTGATCTCATTTCCAAGCTACTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTATTGAATGGGAAGGGATTAGAAACCACACTTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGACTGTAGTGCTGGATATCCGGGCTCGCCTTTACAGGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3240 0.4512 MGCIYSRVCIGDNCRGSSINGDPINRTTEVGEVANFSHTSSDVEEGEIRDQLNQLSITRDSETGIRRLSRVSAQFLPPDGSRIVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTNPNDHFFGVFDGHGEFGAQCSQFAKRKVCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTESTVGQSQSASYGDVFRKPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQVWVPPPSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGNGEFEVLSTQEEKEGDVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILVSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDNNEILALYIIQKGCVKITFDSDLLTSPNAYSLKPDIQNEEEDVQSITELSIEKPEGSYFGEWVLYGERIGSISAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKSRDNSKELTRRNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGVANLKESENLLTLKRFSKPKVKRLGKESQVLKEKDLIKGLGSSTSIPQVLCTCADRMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPESFSSETVDLISKLLEVEENNRLGSQGPDSVKSHPWFNGIEWEGIRNHTFPVPQEIISRITQYLEVHSEDCSAGYPGSPLQEVEELNVPEWLEDW 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00108 1079 CDD CAP_ED 606 730 IPR000595 -
Phco5g00108 1079 Pfam Protein kinase domain 787 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00108 1079 SUPERFAMILY cAMP-binding domain-like 461 589 IPR018490 -
Phco5g00108 1079 ProSiteProfiles Protein kinase domain profile. 767 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00108 1079 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 596 745 - -
Phco5g00108 1079 CDD PP2Cc 110 384 IPR001932 -
Phco5g00108 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Phco5g00108 1079 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Phco5g00108 1079 Pfam Protein phosphatase 2C 121 363 IPR001932 -
Phco5g00108 1079 Gene3D Phosphorylase Kinase; domain 1 765 851 - -
Phco5g00108 1079 SUPERFAMILY cAMP-binding domain-like 597 737 IPR018490 -
Phco5g00108 1079 Gene3D Jelly Rolls 451 588 IPR014710 -
Phco5g00108 1079 SMART serkin_6 775 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00108 1079 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Phco5g00108 1079 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Phco5g00108 1079 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Phco5g00108 1079 PRINTS cAMP-dependent protein kinase signature 725 737 - -
Phco5g00108 1079 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Phco5g00108 1079 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Phco5g00108 1079 Pfam Cyclic nucleotide-binding domain 499 588 IPR000595 -
Phco5g00108 1079 SUPERFAMILY Protein kinase-like (PK-like) 753 1050 IPR011009 -
Phco5g00108 1079 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Phco5g00108 1079 SMART cnmp_10 480 603 IPR000595 -
Phco5g00108 1079 SMART cnmp_10 606 744 IPR000595 -
Phco5g00108 1079 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 454 594 - -
Phco5g00108 1079 Gene3D Transferase(Phosphotransferase) domain 1 852 1037 - -
Phco5g00108 1079 Gene3D Jelly Rolls 593 753 IPR014710 -
Phco5g00108 1079 CDD CAP_ED 480 588 IPR000595 -
Phco5g00108 1079 Gene3D - 89 385 IPR036457 -
Phco5g00108 1079 ProSiteProfiles cAMP/cGMP binding motif profile. 606 746 IPR000595 -
Phco5g00108 1079 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 466 1038 - -
Phco5g00108 1079 SMART PP2C_4 90 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00108 Phco-Chr5 841544 849884 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Phco5g00108 Pkinase 4.9e-32 CL0016