Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00107 ATGGCAGGGAATTCATCAAACTCAGGAAGGGGAAAAAGCATGGTTGAAGGAAAGAAAGACGCAAAGGAACTCCAATTCAACGATGAGTTGCAGCTGGATTTCATACTTGATGCAGGAATTGTGAAAGACTGCGAATTGAGTTTGCCATATGGGGTGCAACTGACCAATGACAAGTGGAACCTGTTCTTGCCATTGCAGGGGTTTGAAGAAACCCTAATAGGGTTTTTGAAGGAAGAAGAAGATGTGAGAGAAGGGATCCAAGTGAAAGTTTACGATAGAGGAGGCCATGAATTCGAAATGATGCTGAAGAAATGGGTGAAAGACTCGAATCAGTTCTACGTGCTGAACAGAGGGTGGTTCAGTTTCTGCAACCAACATGGTTTGGGGCAAGAAGATCTCATAGCTTTGCGCGGTTTTCGCCATTCCATAACAGATATGTTATCTTTTGTTGTTACTTTCAGAAAAATGAGGTAA 474 0.4262 MAGNSSNSGRGKSMVEGKKDAKELQFNDELQLDFILDAGIVKDCELSLPYGVQLTNDKWNLFLPLQGFEETLIGFLKEEEDVREGIQVKVYDRGGHEFEMMLKKWVKDSNQFYVLNRGWFSFCNQHGLGQEDLIALRGFRHSITDMLSFVVTFRKMR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00107 157 Pfam B3 DNA binding domain 79 139 IPR003340 GO:0003677
Phco5g00107 157 SUPERFAMILY DNA-binding pseudobarrel domain 60 153 IPR015300 -
Phco5g00107 157 CDD B3_DNA 75 155 IPR003340 GO:0003677
Phco5g00107 157 Gene3D - 51 157 IPR015300 -
Phco5g00107 157 ProSiteProfiles B3 DNA-binding domain profile. 87 157 IPR003340 GO:0003677
Phco5g00107 157 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 153 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00107 Phco-Chr5 834043 834516 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco5g00107 B3 1.2e-09 CL0405