Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00067 ATGAAGACGAAGACGCCATTGAAGCAGCTCAAGCTCGCCGTTCCTGCTCAAGAAACCCCCATTACCTCTTTCCTGACTGCAAGTGGAACGTTCCATGATGGAGATCTACTCTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAGGAATCACGGCCTTCGGATGGTAAGGAACTGGAGTTTGACTTCACACTAGATGACCTTGAGACCATCAAAGTAATTGGAAAAGGAAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTATTCAAATGAATATACAAGAGGATATTCGAAAGCAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCGTTCTATCATAATGGAGTTATATCACTGGTGTTAGAATACATGGATCGTGGTTCTTTAGCAGATGTAATCAAACAAGTTAAAACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTATTGCAAGGTCTTGTTTATCTGCACAATGAAAGACATGTAATACATAGAGACATCAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTAAAGATTACTGATTTTGGTGTTAGTGCTATGCTGGGAAGCTCAATGGGTCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAGTGTGCCATAGGAAGGTTTCCTTATATACAGTCCGAAGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGAAAGCCCCCCACCTTCTGCTCCTCCTGATCAGTTCTCCCCAGAGTTCTGTTCATTCGTGTCATCCTGCATCCAAAAGGATCCTCGGGATAGATTAACATCCTTGGAGCTTCTGAGTCACCCTTTTATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGTAGGTAGCTTGGAACCTCCTGTAAATTTTCCCAGATAA 1065 0.4131 MKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFTLDDLETIKVIGKGSGGVVQLVRHKWVGRLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLGSSMGQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVESPPPSAPPDQFSPEFCSFVSSCIQKDPRDRLTSLELLSHPFIKKFEDKDLDLGILVGSLEPPVNFPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00067 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Phco5g00067 354 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Phco5g00067 354 PIRSF ILK 2 327 - -
Phco5g00067 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00067 354 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Phco5g00067 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00067 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Phco5g00067 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Phco5g00067 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Phco5g00067 354 CDD PKc_MAPKK_plant_like 67 333 - -
Phco5g00067 354 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00067 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 331 - -
Phco5g00067 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00067 Phco-Chr5 450172 453860 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Phco5g00067 Pkinase 3.9e-67 CL0016