Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00062 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTTGGCCTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGAATTTGTTATACCCATCCGGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACAACTGGGACAAGAAAGCGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACACGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGAAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAGTACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCGAACAACAGTAGTAGAAGGGACAGCGGAAGTGGAAGTTGTTCTTCCAAAGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAAGTTTCACTCATCACCCTTTGGACATCCAGCATCTAAAACCCGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCCACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAAATGTGCATGAACGGCAGAGAGCACAACATGTAGCTCATCATCATCATCAACAACAACAACATCAGCAGCATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCTACCCTTATCTCTCCGCCTCCCCTCCACCATACTTCCATCATTCTCGATGACAACTCTTACCACCATGTCTCTAGAATAATGCTCCAAAATGAAAATTTCCAGCAACAACAGCAACAGCATCATAAGCTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGGAGTCATCTATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1356 0.455 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTSFTHHPLDIQHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCENVHERQRAQHVAHHHHQQQQHQQHAHHQISNSAFHISRPSHPISTLISPPPLHHTSIILDDNSYHHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00062 451 MobiDBLite consensus disorder prediction 321 335 - -
Phco5g00062 451 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Phco5g00062 451 FunFam NAC domain-containing protein 73 56 212 - -
Phco5g00062 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Phco5g00062 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 338 IPR044799 GO:0003700
Phco5g00062 451 MobiDBLite consensus disorder prediction 317 343 - -
Phco5g00062 451 MobiDBLite consensus disorder prediction 215 246 - -
Phco5g00062 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Phco5g00062 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Phco5g00062 451 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00062 Phco-Chr5 420674 424724 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g00062 NAM 3e-24 No_clan