Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00056 ATGATGCTCGGAGAGCACCGTCGAGCAAATCCAACGGTCCACGTACCACCGTGGCCAACCCACGATGATCCCACGGCTGAGATGTACTCCGCGTTTTTAACTAACGACGTCAATGCTGCTGAGTACTCTCCGTACTATCTTCAAGAGGCGTTAACGGCGCTGCAGCGCTACCTTCCGGCGAACGAAACGGACGCTGACTCGGACTCGGAGGCTCAGCCCGACGCGCCGGTGGACGCGTACTCGTGCGACCATTTTCGCATGTACGAGTTCAAAATCCGTCGATGCGCGCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGAGAGAAGGCACGCCGCCGCGACCCCCGCAAGTTCCACTACTCCGGCGCGGCGTGCCCTGAGTTCCGTAAGGGTAGTTGCAAGAAAGGTGACACGTGCGAGTTCGCGCACGGCGTGTTCGAGTGCTGGCTGCACCCCGCGCGCTACCGCACGCAGCCTTGCAAGGACGGCACCAGTTGCCGTCGTCGTGTTTGCTTCTTTGCGCACACGCCGGAGCAGCTGCGCCTCGTGCCGATGCAGAGTCCTCGAAGCTCGGGGGAGTCCTATGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTACGGCGTTCATGTCCTCTCCGGCGGCCTCTCTTTCTCCGCCGGAGTCTCCCCCTTTGTCGCCTTCTATGAACGAGATGGTGGCTTCTCTGCGAAATCTGCAGCTCGGTAAGATGAAATCGATGCCTCATAACCGTAACGTTTCGGTCGGGTCTCCTGGATACGGGTCACCGAGAGGCTCCGTGCTTCGACCCGGGTTTTGTAGTCTTCCGACAACGCCAACACAGCAACCGGCTCGGTCTGGGGTGAACTATTTGGATATTTGGGAGCAGAGTGTTGAGGAGGAGCCGGTTATGGAGAGGGTTGAGTCTGGGAGGGGCATAAGGGCGAAGATGTTTGAGAAGCTAAGCAAAGAAAACTCTTTGGAGGGGTCGGGTCAGGGAAGTGGGGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGA 1059 0.593 MMLGEHRRANPTVHVPPWPTHDDPTAEMYSAFLTNDVNAAEYSPYYLQEALTALQRYLPANETDADSDSEAQPDAPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGESYDGSPMRQVLQSTAFMSSPAASLSPPESPPLSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPARSGVNYLDIWEQSVEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGQGSGAPDVGWVSELVK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00056 352 Gene3D - 121 195 - -
Phco5g00056 352 MobiDBLite consensus disorder prediction 1 20 - -
Phco5g00056 352 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Phco5g00056 352 MobiDBLite consensus disorder prediction 328 352 - -
Phco5g00056 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Phco5g00056 352 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Phco5g00056 352 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Phco5g00056 352 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Phco5g00056 352 PANTHER UNKEMPT FAMILY MEMBER 48 352 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00056 Phco-Chr5 378723 379781 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco5g00056 zf-CCCH 2.4e-06 CL0537