Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00030 ATGGGCAGAAAATGCTCACATTGTGGAAACATAGGTCATAACTCCAGGACCTGCTCATCTTTCAGAGCAACTTCTGTAGGAGTTCGTCTCTTTGGGGTTCAACTACACATATCAAACTCTTCTTCTCTTACCATGAAGAAAAGCTTCAGCATGGATTCCTTGCCCTTATTATCCTCTCCATCTTCCTCCTTTTCTTCATCAAGAATATCTATTGACGACCATCCCGAAAAAACCTCTGCTGGGTATCTATCAGATTCAGATGGCCTCATTGTTCGAGCACAAGACAGGAAGAAAGGAGTGCCATGGACAGAAGAAGAGCACAGAAAATTCCTTGTTGGACTCGAGAAGCTGGGAAAAGGCGATTGGAGGGGTATCTCCAGAAACTATGTGACTACAAGAACCCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTATTCGTCTTGCAACCTTGAACAAGAAAAAGAGACGTTCAAGTCTTTTTGACTTGGTTGGAGGCAGCTCTAACTGTAAGTCAGGTGATTTGGTTTCTCCTACTAAATCCAAAGGTGAAATTGAGAACGATGTCAACATGTCACTTCTTCAATTTCAAGAAACCAAGACAGATGAGCAGAAAGATGATGATAATCATTGCCAAGCTCAACCAGGTGCAGATCATGAAGCTGTTATGTGGCTTCATCCTCAGATGAAATCTTCAAATAATATTGCAGCAATTCCTGATCTGGAACTCACTCTTTCAGTCTCCAAGGGCAAGGTTAAGACCATGGAACAAACTAAATCAACCCCTGGTTCCTTCCTTTTTGGCCCAATTAGCGTGACTTAA 825 0.4242 MGRKCSHCGNIGHNSRTCSSFRATSVGVRLFGVQLHISNSSSLTMKKSFSMDSLPLLSSPSSSFSSSRISIDDHPEKTSAGYLSDSDGLIVRAQDRKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDLVGGSSNCKSGDLVSPTKSKGEIENDVNMSLLQFQETKTDEQKDDDNHCQAQPGADHEAVMWLHPQMKSSNNIAAIPDLELTLSVSKGKVKTMEQTKSTPGSFLFGPISVT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00030 274 ProSiteProfiles SANT domain profile. 102 150 IPR017884 -
Phco5g00030 274 SUPERFAMILY Homeodomain-like 96 149 IPR009057 -
Phco5g00030 274 CDD SANT 101 146 IPR001005 -
Phco5g00030 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 150 IPR017930 -
Phco5g00030 274 Pfam Myb-like DNA-binding domain 101 146 IPR001005 -
Phco5g00030 274 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Phco5g00030 274 SMART sant 98 148 IPR001005 -
Phco5g00030 274 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Phco5g00030 274 Gene3D - 100 152 - -
Phco5g00030 274 FunFam transcription factor MYB1R1 100 151 - -
Phco5g00030 274 PANTHER TRANSCRIPTION FACTOR KUA1 3 232 - -
Phco5g00030 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 148 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00030 Phco-Chr5 265188 266450 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco5g00030 Myb_DNA-binding 6.9e-12 CL0123