Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03762 ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCCGTCTGCAGGGGAACATGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCTGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGTCAGATCAAGTTCTGGTTTCAGAACAGAAGGACCCAGATGAAGGCCCAGCACGAGAGAGCCGACAACTGTACTCTTCGTGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCGATGTCGTGTTTTGGAAACCAAGCGTTGGTTGATCATGTTCCCGCACCTTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACTTCCTCATCCTTGCCGAATATGCCTTATCAGCCTCCTTATCTTTCAGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTCAGGCTGGTGCAGACAAACGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGAGATGTCCTTAACTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGCCCCAAGAATCCTAATGTTCGCCTTGAAGCATCACGAGATTCTGCAGTCGTATTAATGAATAGTTTGGCTTTGGCTGATATGTTTATAGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCGGTGGCAACTACTATTCAAGTCATATCTTCTGGGATGGGTGGTTCCTTGCATCTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGCACGTGGGCAGTGGTGGACGTTTCTTATGATTTTCCCCAAGACAGTCACTTTGGTCCTCACTTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGACAAAACTCTGCCTCATCGGCTTTTCAGAAATCTTATTTATAGTGGGATGGCATTTAGCGCTGAAAGATGGCTTGCAACCCTCCAGAGAATGTGTGAAAGACTTACGTATCTGATGGTTACAGCCAATTCAACCAGGGATAATCCTGGAGGAGTAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACCAATTTTTGTGCCAGCATTGGCACATCAAGTGGCCGCCGATGGACCACAATCTCCGGATTGAATGAAATTTTAATCAGAGTCACTGTCCACAAAAGCTCAAATCCTGGACAACCTAATAGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTGCCCACCCCTCCACAAACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTGCAAGAGGTTGCCCAGATAGCAAATGGTACACATCATGGGAATAGCATATCAGTTCTTCGAGCTTTCAACACGAATCAGAACATGTTAATACTCCAAGAGAGCTGCATTGATTCATCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCATGCATTCCCTTGCTACCAAATGGGTTTACGATTTTGCCAGATGGGCAGGCGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGGAAACAGGAACAAGGCAAGGTCTGGGGGTTCACTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAGGTGACAACTGTTAGTAATCTCATTCGCTCCACTGTCCACCAAATAAAGGCTTCATTGAGTTGTCCTACCTAG 2145 0.4699 MEYGSGGGGSPSAGEHDASDSQEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQALVDHVPAPSPSLNLDLLSAGTSSSLPNMPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRDVLNSDAYERIFPKPNSRPKNPNVRLEASRDSAVVLMNSLALADMFIDPNKWTELFPTIVSVATTIQVISSGMGGSLHLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFGPHFRSHRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLFRNLIYSGMAFSAERWLATLQRMCERLTYLMVTANSTRDNPGGVISSAEGKRSMMKLAQRMVTNFCASIGTSSGRRWTTISGLNEILIRVTVHKSSNPGQPNSVVLSAATTIWLPTPPQTVFNFFKDETKRPQWDVLSNGNAVQEVAQIANGTHHGNSISVLRAFNTNQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGQAEQEGDGASTSSNGNRNKARSGGSLVTVAFQILVSSSPSAKLNMEVTTVSNLIRSTVHQIKASLSCPT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03762 714 SUPERFAMILY Bet v1-like 473 692 - -
Phco4g03762 714 MobiDBLite consensus disorder prediction 643 666 - -
Phco4g03762 714 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Phco4g03762 714 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Phco4g03762 714 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Phco4g03762 714 Gene3D - 228 450 IPR023393 -
Phco4g03762 714 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Phco4g03762 714 SUPERFAMILY Bet v1-like 221 451 - -
Phco4g03762 714 SMART START_1 229 450 IPR002913 GO:0008289
Phco4g03762 714 FunFam Homeobox-leucine zipper protein GLABRA 2 229 449 - -
Phco4g03762 714 MobiDBLite consensus disorder prediction 650 666 - -
Phco4g03762 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 710 IPR042160 -
Phco4g03762 714 MobiDBLite consensus disorder prediction 1 33 - -
Phco4g03762 714 Pfam START domain 230 450 IPR002913 GO:0008289
Phco4g03762 714 ProSiteProfiles START domain profile. 220 453 IPR002913 GO:0008289
Phco4g03762 714 CDD START_ArGLABRA2_like 224 449 - -
Phco4g03762 714 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Phco4g03762 714 CDD homeodomain 25 83 IPR001356 GO:0003677
Phco4g03762 714 Gene3D - 12 95 - -
Phco4g03762 714 SMART HOX_1 23 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03762 Phco-Chr4 56937047 56939975 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g03762 START 1.1e-46 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03762 4 56937047 56939975 Phco5g00408 5 3697903 3701348 PCT