Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03758 ATGGCGGACTTCAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACTAGAGCCGAAGCAGCTTTGCGCAGCGAGATAATTAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAATGCCTCATTTGATGTGCCTCAAAGTAACAAGGGGAAGCCTGTGCTTGAGATTCAAGGGGTGGACACTCTTGAATTTTCTAATGAACTGATCATCACTGAAATCGAGTGTGAGAATGGTCGAAATGCCACCGAAAGCAAATGGGAAAATGCTGCTCCCACTTTGGTTGAACGAAGTAAATCGGATGAAGAGGTTTGGGCTAGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGCATGCTTGATTTATACTCATGGAAGTTTAACCCTGGCAAAACTCCTGTGGAGCCTTACCAAAACGACGCTGGCAATAGGGTTAATAATGTTTTGAGTTTGAAGGCCACCGTATCCCAACAATCAAAACGTCAAACTAATGAAACTGTGGATCTAAGTGTTGCCAATACCAGTTCAAAGTCTGGGGAGGAAAATGCTGCCCTTGCAGACAAAAAATCTCTGTGGCCTGGAAGTAGTAGTAAAGCCTCGGTGGATCTTAAGTACGACCTTGTGCAAAGTAAAGAACCTATGGAACTTGATCGGCAGCTTAAATTCAATAGTTCATCTCTTAAAGTGAACTTTACAGATAAACCCTGGTCAAGAGTGGATGAGAATGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACAGTATTCCCCTTCTCGAAAGGGGATGTGTCTACAAGCTTCGATGATGCCACTTATTCTGACAAAAAGGAGGAGAAAAAAAGAGTAGAAATTAATGATACCAGAACATCCATAAAAGAGCAGGTGGATGAATCAGGGAGGTCTATTTACTTGGTCAAGACACCAGTCAGTTCTGAACAGAAGTTGATTGGCAGCTTAAGATTTCCTCTTCCACCTGAAAATGAGAAGGAAGAGTTTCCAAGGCTTCCTCCTGTTAAACTCAAGTCAGATGATAAGCCCCTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAAACCCCCTCGTACTGACAGCTCTTTTCATATTGGTTCATATCTGGATGTACCTATTGGACAAGAAATTAATCCTTCAGGTATGAGGAGGGCTACAGGGGGCAGTTGGCTATCTGTAAGTCAAGGGATAGCAGAGGATACATCCGATCTTGTATCAGGATTTGCTACAGTTGGTGATGGGTTGAGTGAATCTATTGACTATCCGAATGAATATTGGGACTCTGATGAATACGATGATGATGAGGATGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCGCATGAAATTGATTACCCTAGTGACAATGAAAAAGGGACTGGACATGAAAGTGTTCCAGATCCTCAGGAAAGAGGTCAGGCCAAAAATGAGGATGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTTTCTGGGGAGCCATATCTTCAGGCAAATAATGTTGAACCAGTCACAGCTACAGATGATTCTATTGGTCTACCGGTTACTGAGTATGGAAGGACCAATGATAATGATTTACTGGCTCAATATGATGGGCAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCGGTCTGGCGGGGCTTTGTCCCTCAAACTAATGAACTCATGATGCTAGGAGATGGGAGGGTATTGAATGATAATGTAAGATCACGGCTAGAGGACACCAATATGGATGATGATCAACATGGTTCTGTTAGATCAATTGGGGTAGGGATCAATAGTGATGTTGCAGATATTGGTAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCGTGATCGTGACAGGATTGGTGGTTTCAAGCACTCCCATTGTGATTTGGATAAGAAATCTACTAACAAATCAAACAAAAATAAGAACAATGACAAGAGTGAGTCAAATAAGTATGTCACAGGATGTGACAGAGATGCACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGAGATGATTCAGACTTCCACCGATAAGTCCCTGTGGTCAAATAACGGCAATGCAGATGAAATTGATTACTGTCTTAGCGCATTTGTGGAAACTGATGACATGCTTGCTTCCTGGAGGCAAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGATGATAATAATGCTAACAATGTAAGATCCACAAACTCGTCTCCAACAACAATTTCAAATTATGGATATTCTGAAAGAGAGCTTGTAAAGGTGGAAGAGGATGAAAAAACTGGAATTGCAAGGGAAGGTGATCTAGGAGCAGAGGATGAAGAGGTAGCAGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAACTTGAAATCTTCAATTTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCAATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGAATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTTTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCGTATGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCGCCTGCAACATTACTTGCTCGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCGAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGACGTCAACCCTAGGAAGCGGCCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCATACCCGTATGAACCCATATCATCTTGA 3552 0.413 MADFNTSSVDVILEFLRRNRFTRAEAALRSEIINRPDLNGFLQKLTLEENASFDVPQSNKGKPVLEIQGVDTLEFSNELIITEIECENGRNATESKWENAAPTLVERSKSDEEVWASDKNFIFSKTSEDGMLDLYSWKFNPGKTPVEPYQNDAGNRVNNVLSLKATVSQQSKRQTNETVDLSVANTSSKSGEENAALADKKSLWPGSSSKASVDLKYDLVQSKEPMELDRQLKFNSSSLKVNFTDKPWSRVDENVNSSSDSCKNCVKTVFPFSKGDVSTSFDDATYSDKKEEKKRVEINDTRTSIKEQVDESGRSIYLVKTPVSSEQKLIGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSKPPRTDSSFHIGSYLDVPIGQEINPSGMRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGTGHESVPDPQERGQAKNEDDDQSFAEEDSYFSGEPYLQANNVEPVTATDDSIGLPVTEYGRTNDNDLLAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELMMLGDGRVLNDNVRSRLEDTNMDDDQHGSVRSIGVGINSDVADIGSEVRESLVGGSSEGDLEYFRDRDRIGGFKHSHCDLDKKSTNKSNKNKNNDKSESNKYVTGCDRDAQFQIKTHGDGNFSFPLSLKDGEMIQTSTDKSLWSNNGNADEIDYCLSAFVETDDMLASWRQKSSDSSPARSSRDDNNANNVRSTNSSPTTISNYGYSERELVKVEEDEKTGIAREGDLGAEDEEVAAVQEQVRQIKAQEEELEIFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKNDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLDVNPRKRPSASEALKHPWLSYPYEPISS 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03758 1183 FunFam Serine/threonine-protein kinase ppk15 951 1175 - -
Phco4g03758 1183 Pfam Protein kinase domain 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03758 1183 ProSiteProfiles Protein kinase domain profile. 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03758 1183 Coils Coil 814 844 - -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 756 793 - -
Phco4g03758 1183 FunFam Putative serine/threonine-protein kinase dyrk2 866 953 - -
Phco4g03758 1183 SMART serkin_6 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03758 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Phco4g03758 1183 MobiDBLite consensus disorder prediction 479 513 - -
Phco4g03758 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 412 1174 - -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 168 193 - -
Phco4g03758 1183 Gene3D Phosphorylase Kinase; domain 1 866 953 - -
Phco4g03758 1183 SUPERFAMILY Protein kinase-like (PK-like) 861 1176 IPR011009 -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 168 208 - -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 667 688 - -
Phco4g03758 1183 CDD PKc_DYRK_like 872 1174 - -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 479 506 - -
Phco4g03758 1183 Gene3D Transferase(Phosphotransferase) domain 1 926 1174 - -
Phco4g03758 1183 MobiDBLite consensus disorder prediction 756 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03758 Phco-Chr4 56904147 56915114 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Phco4g03758 Pkinase 1.4e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00649 8 6484066 6489902 Phco4g03758 4 56904147 56915114 ECH
Phco4g03758 4 56904147 56915114 Phco4g03758 4 56904147 56915114 ECH
Phco4g03758 4 56904147 56915114 Phco5g00390 5 3482332 3489833 PCT