Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03756 ATGGCCTCCCTAGTAAGGATTGACACGTTAGTCAACAACTTCTCTCCCTCCTCACTTCCCACTCCTGAGCCCTTTTCCTGCCCCCAGAATGCTATTACTGCCACTAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTCGTCTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTGCCGTGGAAGCTCTTGAAGAGGGAGACGCCGCTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCGTGCCATGCTCTGGGTGATCTTGTTGGCATAAAGAAGCACTTCAGAAGAAAACACAGTAGTCACAAGCAATGGGTCTGCGAGAGATGTTCCAAAGGCTACGCAGTGCAGTCTGACTACAAAGCACATCTTAAAACATGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGCTTGGGGCCAGAAACACAGGCAGTGCACGCTGCTGTGTGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACAGGTGCTCCTTTGCAAGGCCATGACAGTAGTGGGGCGCAGAGAGAAGCAGCATCTTTCCAAATATGCAGAGACCATTCTAAGCTTTTGGGAACCAATACAAAAAGCCGTAGAAAGGCCAAAGAAATGAGCAGCTTAAAGTGCCGTATTTCTTTAGTTTCCTCAGCTGGTAGCTTTTTATCTTGGACCATGTGCTTCTTCTCTCTCGTCTATGCATCGTTGTAA 894 0.5078 MASLVRIDTLVNNFSPSSLPTPEPFSCPQNAITATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQAVHAAVCLSRTASSPSSENNFSTGAPLQGHDSSGAQREAASFQICRDHSKLLGTNTKSRRKAKEMSSLKCRISLVSSAGSFLSWTMCFFSLVYASL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03756 297 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Phco4g03756 297 Gene3D Classic Zinc Finger 128 206 - -
Phco4g03756 297 Gene3D Classic Zinc Finger 44 108 - -
Phco4g03756 297 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 226 IPR031140 -
Phco4g03756 297 SMART c2h2final6 107 137 IPR013087 -
Phco4g03756 297 SMART c2h2final6 143 170 IPR013087 -
Phco4g03756 297 SMART c2h2final6 66 88 IPR013087 -
Phco4g03756 297 MobiDBLite consensus disorder prediction 213 234 - -
Phco4g03756 297 SUPERFAMILY beta-beta-alpha zinc fingers 63 89 IPR036236 -
Phco4g03756 297 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Phco4g03756 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Phco4g03756 297 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03756 Phco-Chr4 56886355 56889715 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco4g03756 zf-C2H2 0.0025 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03756 4 56886355 56889715 Phco4g03756 4 56886355 56889715 ECH