Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03747 ATGAACTCAGTTTCCACGTGCCAGTTGGAGAGCTATCGCTTAGAGTCACGCAGGATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCCACCGATCAGAATCAGAATCTGAATCAGAATCATATTCATAATCAGAATGGTGCCGCTGCTGCTGTTGCTGGTTCCTCCAGTACAACAAATCGACATAGGAGGAGCGCTCCTATTCCTAGTCTTAATCCCAATCCTAATCCCAATCCTATTCCTAATCCCAAGAGTAATGTGCAGAAGAGATTCAATTTGAGGGACTCTAATTTGCCTCAGCTGCTGCAAGAGATCCAGGACAAGCTCGTGAAAGGTGCTGTCGAGTGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCTCCAATCTGGTCTTGCTCCAGTTGCTTTTCCATCTTTCACCTCAATTGTATAAAGAAGTGGGCGCGTGCACCCACTTCTGTGGACGTGTCTGTTGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCTCATCATCCAAGGAGATTCGTTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCCTCCGATTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCTCTTGAAAGGGAGCTTGGCGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCGTTTGCCCCTCCACGTTTGTGTCCTTGCGGGAAGAAAAATATCACCACCCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGTCATCGGTGTGAGCAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCAGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAGATCATTCTTTGTGGGGACATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGTGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATCGAGATTTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTATTACCATCCCATATTAAGACATGCTGTTGCGGGAAAACTAAATTGAAGCAGGAACGGCAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCACTGTGAAGAGGCATGCCACGCTGGGGATTGTTCTCCTTGCTTGGTTCTAGTCTCCCAGAAATGTCGATGTGGCTCTACTTCCCGAACCGTGGAGTGCTGTAAGACAAAAGTGGATGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATAGATGCAGTGAACGATGTTGTCCACTTTCTAATCCAAATAATGTTCAAATTGCGGATTGGGATCCTCACTTCTGTTCATTGCCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCTTTGCCTTGTGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTTACATCCAGCCTCTCACAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGCAGAACATGTCACCTTCCACCTTGTGATAATCCATCTGCAGTGCCGGGTACCCGTGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGATACAAGATGCGAATTCCCTGTCACAATTTCATGTTCTTGTGGCCGAATAACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTGCTTCAACCTGTTGCTGCAAATGGAAAGAAAGCTCCCCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAAAGGGTTCTTGCTGATGCCTTTGAGATTACCCCTCCAAATCTTGATTCTCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTGCTGACATGTTGAGACGTGATCTTAAGTGGGTTTTATCTGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATGCTTTCTGTCCCATGTTAAAGGACAAAAGAGATGCAGTGAGGGTCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGATTTGTACTTGTTCATGTTACCCCCAAATCAAGAGCTCCTGCTCGTGTGCTTGGGGTTAAGGGCACTACAACTGTAAATGCACCCATTCCTCCTGCATTTGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTGCCAAGGGAGGCAGATATCAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTGAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCACTGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTCGTGACTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCTACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGTAATCCGTGGAAAAAAGATGTTGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGCGATGAGGAGTGGGCTACTGGTTCTGCTAATGTCCATTTGCCTATCCAGAAGAAAGAAACCCTCATATCTGCTTCAGTAAACCCTTGGAGTGTCTTGAATCAAGAATCTTCTTCAAGTTCATCGACCGCAGCTGTTAAAAGTGATGTTTCCAGGGAAGACTCAGAAAGTAGTTCTGTCACAAACTTGGAGCCTCATAATGGCGGTTCAAGTATAGGAGGACAGCATGCAGGAAACTTGCATACTTCAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3309 0.469 MNSVSTCQLESYRLESRRMSSQERSQRSRVPRQEWIRRGSTDQNQNLNQNHIHNQNGAAAAVAGSSSTTNRHRRSAPIPSLNPNPNPNPIPNPKSNVQKRFNLRDSNLPQLLQEIQDKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLSSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTEIILCGDMALKGEIKTEGGVFSCGSTCGKKLGCGNHICIEICHPGSCGECGLLPSHIKTCCCGKTKLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNVQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCLHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSAVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFPVTISCSCGRITANVPCDAGGSCANYNADAVHEASIIQKLPVLLQPVAANGKKAPLGQRKLMCNDDCAKLERKRVLADAFEITPPNLDSLHFGDNPVASELLADMLRRDLKWVLSVEERCKVLVLGKNRGNTQGPKIHAFCPMLKDKRDAVRVIAERWKLAVYVAGREPKRFVLVHVTPKSRAPARVLGVKGTTTVNAPIPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATALRRLDHGTVYQGAVVVTVPNVGASAASSATNAWGGSGTMKGGGSLAALKGNPWKKDVVQEPGWKDSWGDEEWATGSANVHLPIQKKETLISASVNPWSVLNQESSSSSSTAAVKSDVSREDSESSSVTNLEPHNGGSSIGGQHAGNLHTSEDSEVVDDWEKACE 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1060 1087 - -
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1 15 - -
Phco4g03747 1102 CDD NF-X1-zinc-finger 280 328 - -
Phco4g03747 1102 Pfam NF-X1 type zinc finger 237 252 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 618 633 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 508 525 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 649 674 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 290 308 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 412 429 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 354 371 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 470 481 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 Pfam NF-X1 type zinc finger 573 582 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 CDD NF-X1-zinc-finger 215 273 - -
Phco4g03747 1102 CDD NF-X1-zinc-finger 344 387 - -
Phco4g03747 1102 SMART znfxneu3 290 309 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 656 677 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 618 647 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 354 373 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 565 583 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 470 500 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 235 253 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 412 431 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 SMART znfxneu3 508 527 IPR000967 GO:0005634|GO:0008270
Phco4g03747 1102 MobiDBLite consensus disorder prediction 16 36 - -
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1 98 - -
Phco4g03747 1102 ProSiteProfiles Zinc finger RING-type profile. 126 182 IPR001841 -
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1088 1102 - -
Phco4g03747 1102 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 32 1008 IPR034078 GO:0003700
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1038 1053 - -
Phco4g03747 1102 CDD RING-CH-C4HC3_NFX1-like 125 182 - -
Phco4g03747 1102 CDD NF-X1-zinc-finger 498 541 - -
Phco4g03747 1102 SUPERFAMILY RING/U-box 116 185 - -
Phco4g03747 1102 MobiDBLite consensus disorder prediction 1038 1102 - -
Phco4g03747 1102 MobiDBLite consensus disorder prediction 37 79 - -
Phco4g03747 1102 ProSiteProfiles Zinc finger PHD-type profile. 123 184 IPR019787 -
Phco4g03747 1102 CDD NF-X1-zinc-finger 402 450 - -
Phco4g03747 1102 CDD NF-X1-zinc-finger 555 603 - -
Phco4g03747 1102 CDD NF-X1-zinc-finger 645 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03747 Phco-Chr4 56840975 56844283 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Phco4g03747 zf-NF-X1 1.7e+02 No_clan