Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03744 ATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGCCACTCTGGCGCTCATGCTCGTAGCAGCATATGCAGATCTGGCCTCCGAGCGAGCCGCATTGCTCGCTCTCCGCTCTGCTGTCGGCGGCAGAACCCTCTTCTGGAACGCCACCAGGGAGAGCCCCTGCACATGGGCCGGGGTTCAATGCGAGCGCGACCACGTCGTAGAGCTTCACCTCCCCGGCGTCGCTCTCTCCGGCCAAATCCCTGTCGGAATATTCGGCAATCTGACACAGCTGCGCACCCTCAGTCTCCGCTTCAACGCTCTGCGGGGTTCCCTGCCTTCAGATCTGGCGGCGTGCGTTAACCTTCGGAACCTGTACATTCAGCGGAACCTCCTGAGCGGCGCAATCCCAGCGTTCTTGTTCGAGTTACCGGACCTGGTTCGGTTGAACATGGGCTTCAACAACTTCTCAGGCCCATTTCCGAGCGGCTTCAACAGCCTAACCCGGTTGAAGACTTTGTTTGTGGAAAACAACCAGCTCTACGGCCCAATCCCCGACCTCGGCAAATTGAGCCTGGATCAGTTCAACGTCTCCAACAACCTCCTCAACGGCTCTGTCCCTCTCAAGCTTCAGACATTCCCTCAGGATTCCTTTCTTGGCAACTCCCTCTGTGGCCGCCCACTCTCTCCCTGCCCCGGAGATATAGCCGATCCTATCTCCGTCGACAACAACCCCAAGCCCAACAACAAAACCACCCACAAGTTATCTGCCGCCGCCATTGCGGGGATTGTTGTCGGATCGGTCGTGTTTCTTCTGCTTCTCGTCTTCCTCTTCATTTTCCTGTGCAGGAACAAGACTGCCAAGAAGACCAGCGCCGTCGACATTGCTACTGTCAAACATCCTGAGGCCGACGCCCAGGTTCTTGCAGAGAAGGGGCTTCCGGATGTCGAGAACGGCGGTCATGCCAACGGCAATTCTGCGGTGGCTGTGGCCGTGGCTGCGGTTTCGGCGGGGAATAAGGCCGAAGGGAACAGTGGTGGGGCAGCGAAGAAGCTGGTGTTTTTCGGTAATGCGGCTAAGGCGTTTGATTTGGAGGATTTGCTCAGAGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTATAAGGCGGTGCTGGAGGCAGGGCCCGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCTGAGAAGGAGTTTAAGGAGAAGATTGAAGCAGTGGGAGCTATGGATCATGAGAGTTTGGTTCCTCTCAGAGCTTTCTATTTCAGCAGAGATGAGAAGCTCCTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTACATGGAAACAAAGGGGCGGGTAGGACGCCACTGAATTGGGAAGTGAGATCAGGCATTGCACTTGGAGCCGCCCGTGGCATTGAGTACCTGCATTCACGAGGGCCTAATGTTTCTCATGGAAATATAAAGTCATCCAACATCCTCTTAACCAAATCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACATCTCGTTGGCCCCTCCTCTACCCCCAACCGGGTCGCCGGCTACCGTGCACCTGAGGTGACTGATCCTCGCAGGGTGTCTCAGAAGGCAGACGTGTACAGTTTTGGTGTGCTACTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTAGACCTTCCCAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCTGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAGCATAGAAGAGTTGCGAAGGTCTAGCCTTAAAGAGGAGCAGGAGCAGGACCAAATCCAACATGATCCCGTCAATGATATAGAATTGTAG 1971 0.5439 MLPHKHTLVVVAATLALMLVAAYADLASERAALLALRSAVGGRTLFWNATRESPCTWAGVQCERDHVVELHLPGVALSGQIPVGIFGNLTQLRTLSLRFNALRGSLPSDLAACVNLRNLYIQRNLLSGAIPAFLFELPDLVRLNMGFNNFSGPFPSGFNSLTRLKTLFVENNQLYGPIPDLGKLSLDQFNVSNNLLNGSVPLKLQTFPQDSFLGNSLCGRPLSPCPGDIADPISVDNNPKPNNKTTHKLSAAAIAGIVVGSVVFLLLLVFLFIFLCRNKTAKKTSAVDIATVKHPEADAQVLAEKGLPDVENGGHANGNSAVAVAVAAVSAGNKAEGNSGGAAKKLVFFGNAAKAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAFYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIEELRRSSLKEEQEQDQIQHDPVNDIEL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03744 656 CDD STKc_IRAK 369 632 - -
Phco4g03744 656 FunFam pollen receptor-like kinase 1 332 437 - -
Phco4g03744 656 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Phco4g03744 656 FunFam Probable inactive receptor kinase At1g48480 438 641 - -
Phco4g03744 656 Gene3D Transferase(Phosphotransferase) domain 1 438 654 - -
Phco4g03744 656 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Phco4g03744 656 PANTHER OS05G0588300 PROTEIN 10 639 - -
Phco4g03744 656 Pfam Protein kinase domain 366 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03744 656 FunFam Probable inactive receptor kinase RLK902 26 182 - -
Phco4g03744 656 MobiDBLite consensus disorder prediction 635 656 - -
Phco4g03744 656 SUPERFAMILY Protein kinase-like (PK-like) 367 634 IPR011009 -
Phco4g03744 656 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Phco4g03744 656 Gene3D Phosphorylase Kinase; domain 1 329 437 - -
Phco4g03744 656 Gene3D Ribonuclease Inhibitor 141 225 IPR032675 -
Phco4g03744 656 ProSiteProfiles Protein kinase domain profile. 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03744 656 SUPERFAMILY L domain-like 47 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03744 Phco-Chr4 56830790 56833333 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco4g03744 Pkinase 2.1e-38 CL0016