Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03676 ATGAAGAGTGAGCAAGCAGGCAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGCTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTCAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCCTCTGCAATTGATCAGGAAACGTTTGCAGAGTATACAGCCAGGACAGCATTTGAACGGCCATTGCTCAGTGGGGTGGCCTATGCACAAAGAGTGGTTAACTTGGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACACTGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCGCAAGAAACTGTTTCTTACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAATGCTGTTCTTACTAGCCCTTTCAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTCAAAAGCCAACAATGGAAGAGCGCATTAAAGCAACAGCTGGATATGTTGGAGGATCCTTTGATGTTGAATCCCTTGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGATATCACAAACTTTACTGATCCCTTAATCATGTATGGCAAGCAAGATGAAGAAGGTGATATGTCTCTTGTGCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACAAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCGGAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCGCAGTTTCTAGCTACCGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGGCACAGAATTGAGTTCGACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAGGTGCTTGACCGAGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTCCTCTCTCTTTCTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCCGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCTGTTAAATTCACTGAGCGAGGACATATATTTGTGAAAGTCCATCTAGCTGAAAATAGGGTGCCCACAGTGAATGGAAAAATTGACACTTTTCTGAATGGACGATCAGATGAAGTTGTGCATATGTCTAGTGGTGGTTATAATTTCAAAACTTTAAGTGGATATGAAGCAGCTGATGAGCGGAACAGCTGGGACAATTTTAAGCATCTGATCGCGGATGAAGAATTTTTCTTCGATGATTCAGTTAAAAAGGTGGCCAGTGAATCTTATGAGCAAGTCACCTTGATGGTCAGTGTGGAGGACACAGGAAATGGAATTCCTTTCTTAGCCCAAGATAAGATTTTCATGCCTTTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGTAAGTGCCTGGTTGAACTAATGGGTGGTGAGATAAGTTTTATAAGCCGACCCCAGGTTGGGAGCACGTTTTCATTTAGTGCAGATTTTGGAACTACTAAGAAAAATTCAATAATTGACATGAAGAAACATAACTTGGAAGACCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGCAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACTTCAGGAATATTTCAGCCTGATATGATCTTTGTTGAGAAAGACTCGTGGATTTGCGGAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAACGGGCATATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATACTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACGGGGAAGAAGAGGCAGCTAGGAAAAAACACGGGTTCCACTTTTGCACGAAGCCTTCTCTGTGGGAAAAAGATATTAGTGGTTGATGACAATAGGGTAAATAGGAGGGTCGCTGCAGGTGCATTACAAAATTTTGGAGCTAATGTGACGTGTGCAGAAAGTGGAAAAATTGCTCTTGAAATGCTTCAATTGCCCCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCTACTGGAAAAATTCGGGATATGGAGAGAAAGGCAAATGAACGTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAATGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACATACGAGAAGTGCGTGGAATGTGGAATGGATGGTTATGTAACAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCGGACAACTCATTACAGAATGGCAACAGAACTGGGAAAGCACCTTAA 3000 0.4183 MKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTQMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNLERESFEKQHGWVIKTLERKPSQVRDEYAPVIFAQETVSYLESLDMMSGEEDRENILRARATGNAVLTSPFKLLGSHHLGVVLTFPVYKSKLPQKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLSSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRVPTVNGKIDTFLNGRSDEVVHMSSGGYNFKTLSGYEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFLAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFSADFGTTKKNSIIDMKKHNLEDLRSSFRGFKAIVVDAKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNTEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKNTGSTFARSLLCGKKILVVDDNRVNRRVAAGALQNFGANVTCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIRDMERKANERLMNGECGEGNGWKNEYHLPILAMTADVIQATYEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNSLQNGNRTGKAP 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03676 999 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Phco4g03676 999 CDD HATPase_EvgS-ArcB-TorS-like 483 661 - -
Phco4g03676 999 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 661 IPR003594 -
Phco4g03676 999 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 432 IPR036097 GO:0000155|GO:0007165
Phco4g03676 999 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Phco4g03676 999 PRINTS Bacterial sensor protein C-terminal signature 623 641 IPR004358 GO:0016310|GO:0016772
Phco4g03676 999 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Phco4g03676 999 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Phco4g03676 999 ProSiteProfiles CHASE domain profile. 93 305 IPR006189 -
Phco4g03676 999 Pfam CHASE domain 96 276 IPR006189 -
Phco4g03676 999 SUPERFAMILY CheY-like 841 980 IPR011006 -
Phco4g03676 999 SMART CHASE_2 93 278 IPR006189 -
Phco4g03676 999 CDD REC_hyHK_CKI1_RcsC-like 844 975 - -
Phco4g03676 999 SMART HKATPase_4 478 663 IPR003594 -
Phco4g03676 999 CDD HisKA 366 427 IPR003661 GO:0000155|GO:0007165
Phco4g03676 999 Gene3D CHASE domain 97 312 IPR042240 -
Phco4g03676 999 Coils Coil 416 436 - -
Phco4g03676 999 ProSiteProfiles Response regulatory domain profile. 843 979 IPR001789 GO:0000160
Phco4g03676 999 ProSiteProfiles Response regulatory domain profile. 688 818 IPR001789 GO:0000160
Phco4g03676 999 FunFam Histidine kinase 4 338 429 - -
Phco4g03676 999 Pfam Response regulator receiver domain 844 912 IPR001789 GO:0000160
Phco4g03676 999 Gene3D - 44 96 - -
Phco4g03676 999 Gene3D - 338 429 - -
Phco4g03676 999 Gene3D - 430 667 IPR036890 -
Phco4g03676 999 SMART REC_2 842 975 IPR001789 GO:0000160
Phco4g03676 999 Pfam His Kinase A (phospho-acceptor) domain 366 431 IPR003661 GO:0000155|GO:0007165
Phco4g03676 999 PANTHER TWO-COMPONENT HISTIDINE KINASE 14 976 - -
Phco4g03676 999 FunFam Histidine kinase 4 97 312 - -
Phco4g03676 999 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 658 IPR036890 -
Phco4g03676 999 Gene3D - 681 822 - -
Phco4g03676 999 Gene3D - 837 985 - -
Phco4g03676 999 ProSiteProfiles Histidine kinase domain profile. 373 663 IPR005467 -
Phco4g03676 999 SUPERFAMILY CheY-like 684 819 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03676 Phco-Chr4 56444774 56449860 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g03676 HATPase_c 9.8e-30 CL0025