Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03673 ATGGGGAAGCATGAATTGGGTTTTGGAGCTCCTTTCTTTTATTATTTTCTATTTGTTCTCTCTTTTCTTGTTATCTCAATCAGGTGTCAAGATGCAGAGATAATAGGAATTCTAAAAAACACAATCAATGCTCCCGTTAGCTTCGAATGGACAGGTCAAGATATATGCAAATGGAAACACATTGTGTGTGATGCATCAAAACGTGTGAAAGCTATTCAAATTGGGAATCAAAACCTCCAGGGAACTCTCCCCAAGGAGCTTGTCATGTTGACAGCGTTGACACGTTTTGAGTGTCAAGGCAATAGTCTCACAGGCTCATTCCCCTACCTCTCAAAATCCTTGCAGAAGTTGATAATCCATGACAACAGCTTTAACTTGCTTCCCCAAGATTTCTTCAAGGGCATGAGCAGTTTGCAAGAGGTAAGAATTGATGACAACCCCTTCTCTCAATGGAACATTCCTAGCAGTCTCAAAGACTGTGTCGCACTCCAAATTTTTAGTGCTCAAAGTGCTGGCCTTGCTGGGACAATCCCAGACTTTTTTGGTAGAGATGGTCCCTTTGCAGGTTTGGTTTTGTTAGCTTTATCTGATAATTTTCTAGAAGGTCCATTGCCTGCAAGCCTCTCAGATAGCTCAATAGAGAATCTTCTGGTGAATGGACAGAATAGCAACTCTAAACTCAATGGCACCCTTGGGGTGTTACGCAAAATGAAATCATTGAAACAAATTTGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAAATTTGGCACAACATGATCAACTTTATGATGTCAACTTAAGGGATAACCAATTAACTGGTGTTGTTCCACCCTCCTTAATTGATCTACCCAATTTAAAGTTTGTGAACTTAACCAATAATCTTCTTCAGGGATCCCCTCCTAGGTTCAAAAACGGGGTAGGAGTTGACAATAACATGGATAAAGGGAGGAACCAATACTGCACGAACGTGGCAGGGCAACCATGTAGTCCCCTTGTAAATGCTTTACTATCTGTTGTTGAACCTTTGGGGTATCCTCTAAAACTTGCTCAAAGTTGGCAGGGTAATGATCCATGTGTTAATAGGTGGACAGGTATAGTTTGCTCCGGGGGAAATATTTCAGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATTTGTCCATGTTTTGACAGACTTACTTCAGTAACAAAAATATTTCTTGCTAACAATGATATCACAGGTACTGTACCAAATGAACTTGCTAGTTTGCCTCATTTGCAAGAGTTAGATGTTTCAAATAACCATATATATGGCAAAGTGCCTTCGTTTCCTAAAGACGTGGTTTTTAAATACGAAGGGAATCCAGATATTGGAAAGAAAGAACAACAAACTCAGACAAGTCCTAAAGGCAATGGAAATAATAGCAACATTGCAGTAATTATTGGAGTTATAGTGATGGTTGCTATTTTACTTGTTGTTGGGGTTCTAATACTTGTTGAGTTTAGGAGAAAGGGGAAGTATGCGGGTAAGCTTCAAAACTTAACCACAGCTTTGGTACCTCCTTATTATGGGGATGGAAATGCTGCAAAGATAAGTGGTGGAGGTCATGGAGAAGGAAATGTTAGCTCATTATTAAGTCCTACACACAGTGTTTACCATGGAGAAGCTAGTAACATGTTAATTTCAATTCAAATTTTGAGAGAAGTAACCAACAATTTCAGTGAGGAAAACATATTGGGAAAAGGGGGATTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAGCAGGATTAGTGGATCAAAAAGGGTTGAGTGAGTTCACAGCTGAAATTGCTGTGCTCACCAAGGTTCGACACAAAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAATGAGAGACTTCTTGTGTATGAATGCATGCCCCAGGGTGCTCTTAGTAAACATTTGGTTGATTGGAAAGAAGCAGGGTTAAAACCACTTGAATGGAAAACAAGACTTAGTATAGCCCTGGATGTTGCCAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAAATTTTTATTCATAGGGATCTCAAACCATCCAATATTTTGCTTGGAGATGATCTGCATGCCAAAGTATCAGACTTTGGATTGGTTCGACTTGCTCCAGAAGGGAAAACCTCGTTTCAAACTAGATTGGCAGGAACTTTTGGATACATGGCACCAGAGTATGCAGCTACTGGGAGACTTACAACAAAGGTTGATGTGTATAGTTTTGGAGTGATTCTGATGGAGATGATAACAGGAAGAAAAGCACTTGATGATAGCCTACCAGAAGAGAACATCCACCTTGTTACATGGTTCCGCAAGATGCTAACAAACAAAGATTCATTCCCAACAGTCATTGACCCAACAATCAAAATTGATGAGGAAACATTAGTTAGTGTGAACACTGTTGCAGGGTTAGCAGGGCATTGTTGTGCAAGAGATCCTTACCAACGTCCTGATATGAGTCATGTAGTGAATGTATTGTCACCTCTTGTCCAAGTGTGGAAGCCATTAGAACCAACTGTTGATGAAATATATGGAATTGACTTTGATATGTCATTACCAGAAGCACTCCAAATGTGGAGACATTTTGAGGAAAGTAACAACACCTTTGACTTAACTTCTTCATCAACACATCTTAATGGAAACAATACAAAATCAAATCCACAAACTCACCCTTCTGTAAGTGCAACTCTTTCACATGCACAGTGA 2766 0.3991 MGKHELGFGAPFFYYFLFVLSFLVISIRCQDAEIIGILKNTINAPVSFEWTGQDICKWKHIVCDASKRVKAIQIGNQNLQGTLPKELVMLTALTRFECQGNSLTGSFPYLSKSLQKLIIHDNSFNLLPQDFFKGMSSLQEVRIDDNPFSQWNIPSSLKDCVALQIFSAQSAGLAGTIPDFFGRDGPFAGLVLLALSDNFLEGPLPASLSDSSIENLLVNGQNSNSKLNGTLGVLRKMKSLKQIWANGNSFTGPIPNLAQHDQLYDVNLRDNQLTGVVPPSLIDLPNLKFVNLTNNLLQGSPPRFKNGVGVDNNMDKGRNQYCTNVAGQPCSPLVNALLSVVEPLGYPLKLAQSWQGNDPCVNRWTGIVCSGGNISVINFQNMGLSGTICPCFDRLTSVTKIFLANNDITGTVPNELASLPHLQELDVSNNHIYGKVPSFPKDVVFKYEGNPDIGKKEQQTQTSPKGNGNNSNIAVIIGVIVMVAILLVVGVLILVEFRRKGKYAGKLQNLTTALVPPYYGDGNAAKISGGGHGEGNVSSLLSPTHSVYHGEASNMLISIQILREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMQSAGLVDQKGLSEFTAEIAVLTKVRHKNLVALLGFCLDGNERLLVYECMPQGALSKHLVDWKEAGLKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDLHAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDSLPEENIHLVTWFRKMLTNKDSFPTVIDPTIKIDEETLVSVNTVAGLAGHCCARDPYQRPDMSHVVNVLSPLVQVWKPLEPTVDEIYGIDFDMSLPEALQMWRHFEESNNTFDLTSSSTHLNGNNTKSNPQTHPSVSATLSHAQ 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03673 921 SUPERFAMILY Protein kinase-like (PK-like) 557 885 IPR011009 -
Phco4g03673 921 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Phco4g03673 921 Pfam Leucine rich repeat N-terminal domain 38 64 IPR013210 -
Phco4g03673 921 Pfam Protein kinase domain 570 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03673 921 FunFam receptor protein kinase TMK1 532 647 - -
Phco4g03673 921 Gene3D Transferase(Phosphotransferase) domain 1 648 856 - -
Phco4g03673 921 SUPERFAMILY L domain-like 334 439 - -
Phco4g03673 921 MobiDBLite consensus disorder prediction 890 921 - -
Phco4g03673 921 SUPERFAMILY L domain-like 33 305 - -
Phco4g03673 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Phco4g03673 921 Gene3D Phosphorylase Kinase; domain 1 538 646 - -
Phco4g03673 921 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Phco4g03673 921 FunFam Receptor-like kinase TMK4 29 327 - -
Phco4g03673 921 Pfam Leucine rich repeat 392 432 IPR001611 GO:0005515
Phco4g03673 921 SMART serkin_6 569 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03673 921 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Phco4g03673 921 FunFam receptor protein kinase TMK1 648 865 - -
Phco4g03673 921 ProSiteProfiles Protein kinase domain profile. 569 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03673 921 PANTHER OSJNBA0070M12.3 PROTEIN 15 898 - -
Phco4g03673 921 CDD STKc_IRAK 575 849 - -
Phco4g03673 921 Gene3D Ribonuclease Inhibitor 30 328 IPR032675 -
Phco4g03673 921 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03673 Phco-Chr4 56431638 56434837 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Phco4g03673 Pkinase 3.3e-49 CL0016