Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03651 ATGGCCGAAATTTCTTCTCCTGCAGTTGACACTCAGCACACACTTCCATTACCATCAATGCTTAATGTGCTTGTCATTGACACCGACCACAGTGTTCTTGAATACATCACGAAAACATGCACCCAGTATTCCTATCAAGTTATACCATGCTCTGATTCTCAGCTTGCTGCCAATTTTTTGCGGGAAAGAAAGGAGCTCATTCATCTGATACTCATTGAGGTTCATATGCCATTGATGGATGGCTATGAATTCCTGCAATTTGTCAATCAAGAAGGAATCAATGTTCCTCTGATCATGATGTCCACGGATGATAGCAGGGCTTCCGTATTGAAGGCCATGAAAGTTGGAGCTCGTGATTATTGGATCAAACCCTTGAAAGAGGATGGGATCTTGAATATGTGGAGACATGTTGCGAGGAACAGCACAAGTAAAGATAAGAAGCAAAAAGATATTGGTAGCCAGAAAGATGATGACAGAACAAGAGTGATAAGTGATCATTCTGAATTTGCTTCATCTGTTGTTGATCTTGATGTTGATGAATCAAACAATACTACTCCACCCTCAACAAAAAAGAATCGTGTAGTATGGTCTAAAGAACTGCATCTTTTGTTTCTCGACGCTATCAAGAAAATTGGATTGGAAAAGCCCGTGCCTCAGAAAATTCTTGAAGCTATGAACGTCCCAGGTTTGAAAAGAGGACATATTGCAAGCCATTTGCAGAAACACAGAAAATCTATCAGACAGAAGCAGATCCAGCAACAGAAAGAGATGTTGTTGCTTTCAGGGAATACAGAACATGAAAGAATCCACTTGCAATCTTTAGCTGCTACTTCACTCACAGATTTTCATCATCCTGGTCTCACAGGCAACATGGAACCAAAAGGAGAGCAACATTTTCATGCAGAAGAAGCTTTGGCACATCATCATTCTCCTTTAGCAACCTTTCCTAACCTTGCCATTGCTGAGAATTCTCCACAGTCCATGAGAACTCTGTATGATGCTTCTATATATAGACTATGTGCTCCTCCCGCAATCGTTAAGAGAAATATTATGCAGCAGAATCATCATCAAATTCATCCAATCAACTTTCACTCATCTTCCATGACAATTTCTGGAAATCCAGCTTTTGTTCCCCAGAATTACAACTCTGGCGTCAACATGGATAATGGGTTAACATCACTTCAATCAATCCATGGTGGAATCAACATCGGTGAAGTGATTCTGAATCAACATACTACTAGAGCTTCTGTTTATTACCCACAGAGTCAAAACGCAGGTTTGTCAAGTTGTGCTGTGAGATCTTCTGATGCAACTAACTTTAGCAGCCAAAATCTCTCCACAGATATTGATGATGAAACAACGAAGGAGCAGCTAATTCAATCAACAATGGATGAAACCATCACAAGGCCTGCGTCTTAA 1419 0.4045 MAEISSPAVDTQHTLPLPSMLNVLVIDTDHSVLEYITKTCTQYSYQVIPCSDSQLAANFLRERKELIHLILIEVHMPLMDGYEFLQFVNQEGINVPLIMMSTDDSRASVLKAMKVGARDYWIKPLKEDGILNMWRHVARNSTSKDKKQKDIGSQKDDDRTRVISDHSEFASSVVDLDVDESNNTTPPSTKKNRVVWSKELHLLFLDAIKKIGLEKPVPQKILEAMNVPGLKRGHIASHLQKHRKSIRQKQIQQQKEMLLLSGNTEHERIHLQSLAATSLTDFHHPGLTGNMEPKGEQHFHAEEALAHHHSPLATFPNLAIAENSPQSMRTLYDASIYRLCAPPAIVKRNIMQQNHHQIHPINFHSSSMTISGNPAFVPQNYNSGVNMDNGLTSLQSIHGGINIGEVILNQHTTRASVYYPQSQNAGLSSCAVRSSDATNFSSQNLSTDIDDETTKEQLIQSTMDETITRPAS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03651 472 Gene3D - 188 249 - -
Phco4g03651 472 FunFam Two-component response regulator 187 250 - -
Phco4g03651 472 SMART REC_2 21 134 IPR001789 GO:0000160
Phco4g03651 472 MobiDBLite consensus disorder prediction 141 160 - -
Phco4g03651 472 Gene3D - 19 158 - -
Phco4g03651 472 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Phco4g03651 472 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Phco4g03651 472 SUPERFAMILY Homeodomain-like 189 247 IPR009057 -
Phco4g03651 472 NCBIfam myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Phco4g03651 472 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 300 IPR045279 GO:0009736
Phco4g03651 472 SUPERFAMILY CheY-like 19 145 IPR011006 -
Phco4g03651 472 CDD REC_typeB_ARR-like 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03651 Phco-Chr4 56234377 56236196 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco4g03651 Response_reg 6.7e-17 CL0304