Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03647 ATGGTGACAAGAAGAAAGCTCCTGAATTTGTTATCAACCCTAAAAGTTTCCGACCTAATTCCTCACCACGCCAATGCATTTAACCCTTTTTCCAAAACCCCCAAAACCCTCAGGGTTTATTACGGAACCCAATCATCCAAACTCCCCGAATACGAGATGCCATCGGTAACATGGGGCGTGATACAAGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGACTACCTCAAGGGGTTGGGCATCATCCCCGACGAGTTACACGACCTCGAACTTCCCTCCACCGTTGACGTCATGCGCGAGCGTGTCGAGTTTCTCCAAAAAACAGGTCTAACTGTCGACGATATCAATAATTACCCTTTGATCTTAGGTTGCAGTGTCAGAAAAAACATGATCCCCGTGTTGGGGTACTTGGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGAATTCATAAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGTTCCTGTTGTTAAGTTCCTCAGGGGCCTTGATGTGGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAACTTCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATCGGTCCAATGGTTACTCAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCCATGATTGATTACTTGGTTGGTTTAGGGCTGCCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTATATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCAAATGTGGAATGTTTGATTAGTTTTGGTGTTCAAAGGGAGTGCTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTGAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGTGTGGTGGAGAACATGCCACAGGTAGTTAGCCTCAACCAGCATGTGATAATGAAGCCCGTTGAGTTCCTCCTTGGAAGGACTATAACAGTGGAGGATGTGGCTAGAATGGTGATCAAGTGTCCTCAGTTAGTGGCTTTGAGAGTTGAGCTGATGAAAAACAGCTTTTACTTCTTTAAGAGTGAGATGGGGAGGCCCTTGAAAGAGCTTGTGGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCTAGGATCAAACCCAGATACCAGAGGCTCCAGAGTAAGGGGATAAGATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGTAGGTCCCAGATTCTGCATGGGAGGGAAATTGGAGCTACCAGGGAATGATATAATGTCAGATGAGGAAGCTGAGAGTGATGATGAAGTATTATACAGACGAACTGTTTCTCTATAG 1485 0.4485 MVTRRKLLNLLSTLKVSDLIPHHANAFNPFSKTPKTLRVYYGTQSSKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKTGLTVDDINNYPLILGCSVRKNMIPVLGYLEKIGIARPKLGEFIKNYPQVLHASVIVELVPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVGLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVQRECLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLNQHVIMKPVEFLLGRTITVEDVARMVIKCPQLVALRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNDIMSDEEAESDDEVLYRRTVSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03647 494 PANTHER CGI-12 PROTEIN-RELATED 136 267 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 Pfam mTERF 136 444 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 FunFam Transcription termination factor mterf4, chloroplastic 100 237 - -
Phco4g03647 494 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 331 361 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Phco4g03647 494 Gene3D Transcription termination factor 3, mitochondrial 240 454 IPR038538 -
Phco4g03647 494 Gene3D Transcription termination factor 3, mitochondrial 99 239 IPR038538 -
Phco4g03647 494 FunFam Transcription termination factor MTERF4, chloroplastic 238 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03647 Phco-Chr4 56209942 56211426 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco4g03647 mTERF 1.3e-108 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03647 4 56209942 56211426 Phco5g00299 5 2510252 2511876 PCT