Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03609 ATGTTCATCAAATTTGCATTTGTTTGCTTTTTTGCTACCTTGTTTCTCTTCTTCACCAAAACCTCTGGGAGCCACAACACATCATCCTCACCAGCTTGTCTTACTCAAAGCTGCACATATGGACCTAACATTAGCTACCCTTTTTGGCTTACCCATGCTGATCAACTTTGCGGTTACCATGAACTTGGCCTTTTCTGTTATGGAGGCCACAACACTTTTTCTCACATAGGATTATACTATAGGGTAAAAGATATAGACTATGAGAACCATAGGCTTCAGCTGGTGGATTTGGACACTTTCAATGAAACTTGTCCGAAGGCACTTCACAGTGTTCCCTTAGGCAACCTACCACTTACTCATTCCCCCTTGAACTTAAACCTTAGCTTTTACTACAACTGCAGTAACTACCCTTCTGGTGTGCCTTCTATCCCGTGTCTCAGTTCTGGGGCAAATCAGTCTTTTGTGTTTGTGTTGGGGAACGAGACCAAAGGTTTTGACTGGTCCGGGAACTGTCAGGAAAATATTGTGGTGACAGTGATGAAGGATAAGATTACAAGTGATGGTGACTTGATAAGCCAGTTTGCTGGTGCCATGGATGAAGGGTTCGTGCTTGACTGGCACACTGCTTCGTATTGCGTTCAGTGCGAGGCTAGTGATGGAGTCTGTGGCTACAGTAACACCGAGAAGGAGGTGTTGTGTTTCTGCAAAGATGGAAGTACAAAAACCAGTACATGTGATGGGGGAAGCAGTACTGGTTTGTCAAGATTAATTATAGGTTTAGTTATAGCTGGTGGAATTGGTGCACTGCTGACATGTGTCGTAGTTTACATTTTTAGACGAAAACTGTCACCAATTTTGTCAGAAATTCGGCTGGCCAAAAAGATTGATCGAGACATTGAGGCCTTCATCAGAAATAATGGACCTCTTCCCATAAAAAGATACTCATATTCAGATATCAAGAAAATGACCAATTCTTTTGAATCCAAACTTGGACAAGGTGGCTATGGTCAAGTATATAAAGGAAATCTAAGCAACAAATCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGTAGAACATCCCATGTAAATATTGTTAATCTCCTTGGTTTCTGTCTTGAAGGCAAGAAGAAAGCTATTATATACGATTTTATGCCCAATGGATCACTTGAAAAGTATATTCGCAACAAGAATTTAGAAACTAATCCACCTTTGAGTTGGCAAAGACTACACCACATTGTTGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGTTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCCAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACAGAAAGTATCATATCTATGTATGATGCTAGAGGGACAGTTGGGTACATAGCTCCAGAAATGTGGAACAGAAACTTTGGAGGGGTGTCATATAAATCTGATGTTTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGCCATTCAAGTGAGACATATTTTCCCCATTGGATATACAAGCATGTTGAGGTGGGAAGAAATTTAGCAATGCGTGAAGGTATGACCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTATGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTAGGGTGGTTGAAATGTTAGAAGGAAGCATGGATCAATTGCAAATTCCACCTGAGCCATTCTTATTTACTCCTATGAAAACTGAAGTGGATATTTGCACGACTGAAGTGGATATTTGCACCACTAGTAGTAGCAGTGATTGA 1914 0.407 MFIKFAFVCFFATLFLFFTKTSGSHNTSSSPACLTQSCTYGPNISYPFWLTHADQLCGYHELGLFCYGGHNTFSHIGLYYRVKDIDYENHRLQLVDLDTFNETCPKALHSVPLGNLPLTHSPLNLNLSFYYNCSNYPSGVPSIPCLSSGANQSFVFVLGNETKGFDWSGNCQENIVVTVMKDKITSDGDLISQFAGAMDEGFVLDWHTASYCVQCEASDGVCGYSNTEKEVLCFCKDGSTKTSTCDGGSSTGLSRLIIGLVIAGGIGALLTCVVVYIFRRKLSPILSEIRLAKKIDRDIEAFIRNNGPLPIKRYSYSDIKKMTNSFESKLGQGGYGQVYKGNLSNKSPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMPNGSLEKYIRNKNLETNPPLSWQRLHHIVEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTESIISMYDARGTVGYIAPEMWNRNFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGRNLAMREGMTPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSMDQLQIPPEPFLFTPMKTEVDICTTEVDICTTSSSSD 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03609 637 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 614 IPR045874 GO:0004672
Phco4g03609 637 Gene3D Transferase(Phosphotransferase) domain 1 399 606 - -
Phco4g03609 637 SMART serkin_6 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03609 637 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Phco4g03609 637 Pfam Protein tyrosine and serine/threonine kinase 326 597 IPR001245 GO:0004672|GO:0006468
Phco4g03609 637 FunFam serine/threonine-protein kinase PBS1-like 296 398 - -
Phco4g03609 637 FunFam PR5-like receptor kinase 399 609 - -
Phco4g03609 637 Pfam Wall-associated receptor kinase C-terminal 148 238 IPR032872 -
Phco4g03609 637 ProSiteProfiles Protein kinase domain profile. 324 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03609 637 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Phco4g03609 637 Gene3D Phosphorylase Kinase; domain 1 303 398 - -
Phco4g03609 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Phco4g03609 637 SUPERFAMILY Protein kinase-like (PK-like) 305 598 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03609 Phco-Chr4 55957452 55960281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco4g03609 PK_Tyr_Ser-Thr 5.9e-46 CL0016