Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03597 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTAATCACGGGGAAGGCCGATGGAACTTGCTGGCTAAACGTTCAGGATTAAAGAGAACTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTAAAACGGGGAAATTTAACCCCACAAGAGCAACTTTTAATTCTTGAACTTCACTCAAAGTGGGGAAACAGGTGGTCGAAAATTGCACAACACTTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACTAGGATTCAGAAACAAGCCAGACATTTGAAAATTGACACTGACAGCAGAGAATTTCAAGAACTTGTAAGGCGTTTTTGGATGCCAAGATTGCTTCAGAAAGCAAAAGAGTCATCATCATCTTCTTCGGTCATGCAAATTCAGAACCAGGCAATTCCTTTGCTTCTTGATGATGGCGTTTCTCAGCAGTCAACGGTTGGGAGCATACCATGGCAGGGACCTTGTATGAGTATGAATGGAGGTAGTCCCACTTACATGGAGCAGCATGAGCAGAACTCAGACTCTGAACACAACAGTGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATGCCAAAAGTGTCTCAGCATTTTGGACACACCATCGACCAATTCCATGGCTTAAGCAACAATGAGTTTGGCACTTTCTCGTATGATGGTTATCATGTAAATGACAATGCCTATGAGATGGACACCTTCAAAACAACAACTGCAAGGATGGCTCAGGATGTTCAATACCCAATTGGTGATTGTCAAACGGCAGGAACCGGTTGGCTAAGCAACGATTTTGCATGTACCATGTGGAACACGGATGAATTGTGGCAGTTTAGCAAGTTACAAAAATAA 948 0.4219 MSTSKSVSSSSEDDNELRRGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSREFQELVRRFWMPRLLQKAKESSSSSSVMQIQNQAIPLLLDDGVSQQSTVGSIPWQGPCMSMNGGSPTYMEQHEQNSDSEHNSGSCISFSESANMPKVSQHFGHTIDQFHGLSNNEFGTFSYDGYHVNDNAYEMDTFKTTTARMAQDVQYPIGDCQTAGTGWLSNDFACTMWNTDELWQFSKLQK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03597 315 Gene3D - 19 71 - -
Phco4g03597 315 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Phco4g03597 315 FunFam MYB transcription factor 75 117 - -
Phco4g03597 315 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Phco4g03597 315 FunFam Myb transcription factor 19 71 - -
Phco4g03597 315 SMART sant 18 68 IPR001005 -
Phco4g03597 315 SMART sant 71 119 IPR001005 -
Phco4g03597 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Phco4g03597 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Phco4g03597 315 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Phco4g03597 315 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Phco4g03597 315 CDD SANT 76 115 IPR001005 -
Phco4g03597 315 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 208 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco4g03597 315 Gene3D - 75 118 - -
Phco4g03597 315 CDD SANT 21 66 IPR001005 -
Phco4g03597 315 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03597 Phco-Chr4 55863423 55864735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g03597 Myb_DNA-binding 9.7e-16 CL0123