Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03587 ATGAAAGACGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGATGGTTCTGTGCAGCTGATGATGCTTTTCTCTGCCATGGCTGCGACAGTTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGACACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGTAACCACCACGACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAGCAAGCACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACGGCAGTCTTCTTCCCCTGGTTCCGGAGCTGGGAGGGGAAGAACAAGAGCCTGTAGTTGTGGATAATGATGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTATTCGACAATTATGATGTGAGAACGGATGACTTGGACAGTTTTTCCGATATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAACCTACTTGTTAAAGAAGACGATGAAATAAGTGCGTGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACCAATGATGATACCCTTCATTGGAATAGCATTGAGTCTGTGCTGTCAGATGCACGGGAAGAGAAGGCATGTGTGGTGGCGAGTGATGGTGGTGTTGGTGAAGATGGAGGAACAAAGAGAGACATATTTTTGAGACTTAACTACGATGAGGTTATAACTGCATGGTCTACCCAAGGTTCTTCTCCGTGGACAACTTCAAACCCACCTAAGTTCAACTCCGGCTATGACTTCTGCCTGGGTCTGAGTGGGGTAGATGGTGAAGTAAGAACCTTAAGGGGTCACCTAGACGGTGGAAGAGAAGCAAGAGTATCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTAAGAAAGTTGAACGCAGAGAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTTGGAGTCAATGCTTTTCCTGCTTACCAATGA 1101 0.4723 MKDAGALGAKTARACDSCISRRARWFCAADDAFLCHGCDSLVHSANQLASRHERVRLQTASSKVTTTTHAWHSGFTRKARTPRHNNNSKHFALQQRLKEEVLFNNGSLLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLVKEDDEISACVGGGVQGAMAKVKDEEDIDGDVACYLESVFDMTNDDTLHWNSIESVLSDAREEKACVVASDGGVGEDGGTKRDIFLRLNYDEVITAWSTQGSSPWTTSNPPKFNSGYDFCLGLSGVDGEVRTLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGVNAFPAYQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03587 366 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Phco4g03587 366 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Phco4g03587 366 Pfam CCT motif 311 353 IPR010402 GO:0005515
Phco4g03587 366 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 354 - -
Phco4g03587 366 SMART bboxneu5 10 57 IPR000315 GO:0008270
Phco4g03587 366 CDD Bbox1_BBX-like 14 57 - -
Phco4g03587 366 ProSiteProfiles CCT domain profile. 311 353 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03587 Phco-Chr4 55793631 55795060 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco4g03587 zf-B_box 8e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03587 4 55793631 55795060 Phco5g00234 5 1921084 1923389 PCT