Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03541 ATGAATTTGCGCCGCGAGATTGGCACTTTAACGGAGGAGCGTGGGATGAAGAGGGGAAGGAGATCTGGCCGGGAAGGTGAGGGGAGTGATTGTGCTCCTAAGAATGATGTGTCTAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGGCAGCTCGATTTCACCGGCTTCGGCGGGATGCCGCCGCAGCCACCGGTGGTTTTGCCGCTGCCGTCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAGTCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCAACTCCCAAGAAGCAAAAGCAGTGCAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAATGTGGAAAATGAAGCTGCAAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCATTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCAGGCTATTCATCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTCTTATTTGGGTCAACCATCAAGGATCCATCACTTGGCAGGCTGGGACAACAGGCAAACAATGTCAGAGTCCCTGCACCGTCCTCATCCTTGTCACCTATTCCAGGTGCCCGTGTTGGACCATCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCGGTTTTGGTGCTGGTATCGGGACAAGCCGCAAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGGAGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCAAGAGCAATTACCAAACCAAAAGGAAGCTAATGTTGAGAAACGTATGGCTGATGATGATTGTTTGAGTGCAAACCAGACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCCAGACACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCGCATGCCTGCAACACATCTTCACAACCGCAATATGGACAAGGAATGACAGGGGTCTATGCCGAGCAAGAAAGGATTGTATTGACAAAATTTAGAGACTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTAGCTAGAAGTGAATTAGATAGTCAAAAGGACCCAAACAACAATTGCACTGGGAATGCCAGTACTACTGAGACAGCGCATCAGCAGGGAACCACTAATAATGGTGTTGCCAAAGCTGCGGGCAGCATTACTTCTACATCTTCGTTCCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1713 0.4542 MNLRREIGTLTEERGMKRGRRSGREGEGSDCAPKNDVSNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQPPVVLPLPSSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQANNVRVPAPSSSLSPIPGARVGPSTLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHGEDHTETSLASSTQEQLPNQKEANVEKRMADDDCLSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEPDTMFMTSASPIGSRAHACNTSSQPQYGQGMTGVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELDSQKDPNNNCTGNASTTETAHQQGTTNNGVAKAAGSITSTSSFPGGSLIPEK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03541 570 MobiDBLite consensus disorder prediction 367 440 - -
Phco4g03541 570 MobiDBLite consensus disorder prediction 1 31 - -
Phco4g03541 570 Coils Coil 143 163 - -
Phco4g03541 570 MobiDBLite consensus disorder prediction 1 36 - -
Phco4g03541 570 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 196 230 IPR005172 -
Phco4g03541 570 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 110 145 IPR005172 -
Phco4g03541 570 MobiDBLite consensus disorder prediction 395 409 - -
Phco4g03541 570 MobiDBLite consensus disorder prediction 516 564 - -
Phco4g03541 570 ProSiteProfiles CRC domain profile. 109 233 IPR005172 -
Phco4g03541 570 MobiDBLite consensus disorder prediction 73 103 - -
Phco4g03541 570 MobiDBLite consensus disorder prediction 516 570 - -
Phco4g03541 570 PANTHER TESMIN/TSO1-RELATED 72 505 IPR028307 -
Phco4g03541 570 SMART CXC_2 108 148 IPR033467 -
Phco4g03541 570 SMART CXC_2 193 234 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03541 Phco-Chr4 55430356 55436875 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Phco4g03541 TCR 3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03541 4 55430356 55436875 Phco4g03541 4 55430356 55436875 ECH