Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03540 ATGGATCCTCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCAGGAGCTTACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAAGAAATCCACGACTACCAGTCCGCGTTCCGAGAAATCGATGCGTTAGAGCTCCTCCAGGGATTCCCAAACGTCATCGTTTTGCACGAGTACTTCTGGCGCGACGATGAAGATGCCGTCCTCGTCCTCGAATTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGCCAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGCTGGATGATCCAGATTCTCTCCGGCGTCGACGCCTGTCACCGCATCATGGTCCTCCATCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAACGGCCTCCTCAAGATCGCCGATTTTGGACAGGCAAGAATTCTCACGGAGCCTGGATTTGATGCTTCTAATAATCATGAAGAATATTCTAGAGACATTAATAATAAGGATACTAGTACTAATACTCACGGTGGAAATGCAACATGCACCACAAGTGACATAGACAGGGAAGATGAAGAGAAAGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTATTAACTCTGCGGCCTTTGTTTCCTGGAGCTGCTGATATTGACCAGATCAGTAGAATCATTGGTGTTTTGGGTAACCTCGATGAGAGTATTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAAAACCCTTCTGGTATTGAAGCCTGTTTACCTAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTTCTAAGAGGGCTACGGCAATGGAGTTAATTCATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCGGTTTCTGAGCTGCCAGTTCCTCTTAACAGAAAAGGGCAAGATGAGGATTCCCCTGGTGGGTGGGGTGATTTAGATGAAATGGAATCTGATTCTGATTTTGATGACTTTGGCCCTCTCAATATCACAAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1221 0.4906 MDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALELLQGFPNVIVLHEYFWRDDEDAVLVLEFLRTDLATVIADAAKANQPLPAGQLKRWMIQILSGVDACHRIMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDASNNHEEYSRDINNKDTSTNTHGGNATCTTSDIDREDEEKELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLRPLFPGAADIDQISRIIGVLGNLDESIWVGCSKLPDYGIISFSKVENPSGIEACLPNRSPDEVALVKRLVCYDPSKRATAMELIHDKYFNEEPLPVPVSELPVPLNRKGQDEDSPGGWGDLDEMESDSDFDDFGPLNITRTGTGFSIQFP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03540 406 FunFam Cyclin-dependent kinase F-1 11 105 - -
Phco4g03540 406 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Phco4g03540 406 Pfam Protein kinase domain 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03540 406 SMART serkin_6 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03540 406 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Phco4g03540 406 MobiDBLite consensus disorder prediction 185 201 - -
Phco4g03540 406 MobiDBLite consensus disorder prediction 356 392 - -
Phco4g03540 406 Gene3D Transferase(Phosphotransferase) domain 1 107 348 - -
Phco4g03540 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Phco4g03540 406 MobiDBLite consensus disorder prediction 372 386 - -
Phco4g03540 406 PANTHER CELL DIVISION PROTEIN KINASE 19 351 - -
Phco4g03540 406 MobiDBLite consensus disorder prediction 175 203 - -
Phco4g03540 406 SUPERFAMILY Protein kinase-like (PK-like) 13 351 IPR011009 -
Phco4g03540 406 ProSiteProfiles Protein kinase domain profile. 20 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03540 Phco-Chr4 55424730 55426562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Phco4g03540 Pkinase 2.3e-53 CL0016