Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03531 ATGTGCAAATTTGAAAAAATGTTGATAGCTTTGTTATTCTTTGCATTCCTTCCCAGCATTATCCAAGTGGATGCCAACTTTTCCAAGAGCATGCACCTCACTTGGGGAGTCCAGCATGCATCAATTCTGGGTGAAGACCTTCATCTTGTGTTGGATAAAACCTCAGGGTCAGCAGCTCAATCGAAGAGATCATTCTTATTTGGAAGCATTGAAATGCAAATTAAGCTGGTACATGGTAATTCTGCCGGAACAGTTACAGCATACTATCTATCCTCTGCAGGGAGCGAGCATGATGAGATAGACTTTGAGTTCTTGGGCAACAGTACAGGACAACCATACACTGTCCATACTAACTTGTACACACAAGGAAAAGGAAGCAGAGAGCAACAATTTTACCTCTGGTTCGACCCAACAGCTGATTTTCACAATTACACCATTCACTGGAATCCCACAGAAATTGTGTGGTATGTTGATGATGTGCCAATTCGTGTTTTCCGAAACCATGAAAAAGAGGGCATCACTTACCCAAACAAACAAGGAATGAGGGTTTACACCAGCCTATGGAATGCAGACAACTGGGCAACCAGAGGCGGCCTAGTAAAGACGGACTGGAATCACGCGCCATTCACAGTCAGATTCCACCATTTCAGAGCAAGGGCTTGCAAGTGGGATGGAGCAAAGAGCATCCATCAATGTGCCTCTAATGCCCCTGCAAATTGGTGGACTTCCGTTAGATACAATAAGCTGACTCCCACCCAGTTGGGGCAGCTGAATTGGATCAGAAACAATTACATGATCTATGACTACTGCACAGATACCAAAAGATTCAACGGACAGATGCCTCCAGAATGCTTTAAACCACAGTTCTAA 870 0.4414 MCKFEKMLIALLFFAFLPSIIQVDANFSKSMHLTWGVQHASILGEDLHLVLDKTSGSAAQSKRSFLFGSIEMQIKLVHGNSAGTVTAYYLSSAGSEHDEIDFEFLGNSTGQPYTVHTNLYTQGKGSREQQFYLWFDPTADFHNYTIHWNPTEIVWYVDDVPIRVFRNHEKEGITYPNKQGMRVYTSLWNADNWATRGGLVKTDWNHAPFTVRFHHFRARACKWDGAKSIHQCASNAPANWWTSVRYNKLTPTQLGQLNWIRNNYMIYDYCTDTKRFNGQMPPECFKPQF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03531 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 284 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Phco4g03531 289 FunFam Xyloglucan endotransglucosylase/hydrolase 14 286 - -
Phco4g03531 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 10 213 IPR000757 GO:0004553|GO:0005975
Phco4g03531 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 286 IPR013320 -
Phco4g03531 289 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Phco4g03531 289 PIRSF EndGlu_transf 1 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco4g03531 289 Gene3D - 17 288 - -
Phco4g03531 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 22 284 IPR044791 GO:0004553
Phco4g03531 289 PRINTS Glycosyl hydrolase family 16 signature 153 170 IPR008264 GO:0004553|GO:0005975
Phco4g03531 289 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Phco4g03531 289 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Phco4g03531 289 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Phco4g03531 289 CDD GH16_XET 22 284 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco4g03531 289 Pfam Glycosyl hydrolases family 16 29 205 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03531 Phco-Chr4 55333114 55334532 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03531 4 55333114 55334532 Phco4g03531 4 55333114 55334532 ECH
Phco4g03531 4 55333114 55334532 Phco5g00115 5 872308 881016 PCT