Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03511 ATGGCTGCACATGGAAAATATGGGAGTGCAGAAACAAAAAGTCTCTCCTCTCATCTCCCACTGTACAAAAGACATTGGGCCACGATTTTGGCACAGCTGTCACAGAGTTGTGGTTTTCTTCCTGCACCTCCTTATCTTTGTGCCACCTATATCACATTGTCATCTAGAAATTCCATCTACTATCGCCCAACAGAGACAAAGCCTTTGTCTTTTCTCTCTCTCCCTCATATGATTTGGTTGAACATAGCCAGTTTAATGGGACACGGGTGCTCAAAAAAAATTGGAATTTCTGGCTGCTGGGGCGGTGATAAGAGGAAAATATCAGAGAAAGTTGTGTTGCGTGTAAACTCACAGGTTAGTCAAAATAATAATATCCACAGCACAGGTGAAGAAGAAGAGGGAGAAGAGAAGAAAGTGATTGGTAGGAATATGGAGAGCACACTGAAGTCATTGAGAGACGGAGAGTCAGTGTTGGACCTCAGCCCCAGATCCACCGTCAGCGGAGGCGTTGAGGATGTCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTCACCCCATGGACTTTCTCAGTTGCCAGTGGTTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGGCTTCTACCTCCCACTGTCAGCAATCAGTCACTTCAGGAGAAGAAGCTGATGCACAACATCAGGCAATATCAGGTTCCCTTGCAAAAGTACGTAGCCATGATGGACCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTCATTGATAATGTCGAGGAATTGCTCCCAGTTGTATATACTCCTACTGTTGGTGAGGCTTGCCAGAAATATGGGAGCATATTCAGGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAATCCTTGAGGTTTTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTGTAACTGATGGTGAGCGAATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGGATTCCTGTTGGTAAATTGGCTTTGTACACGGCACTAGGAGGAGTTCGTCCTTCAGCTTGTTTGCCTGTCACTATCGATGTGGGGACAAATAATGAGAAATTACTGAACAATGAATTTTACATTGGGCTTAGACAAAACAGGGCAACTGGGCAGGAATATTATGAACTTCTGCATGAGTTCATGACTGCTGTGAAGCAAAACTACGGAGAAAAAGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTGCTTGCTAAGTATGGTACAACTCATCTTGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGTGTTGTAGCAGCCCTGAAGCTCATTGGTGGTACCTTGCCTGAGCACACATTCCTCTTTCTTGGTGCTGGAGAAGCAGGAACCGGTATTGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGACACCTATAGAAGAGAGTCGCAAGAAGATATGGCTGGTAGACTCAAAGGGTTTAATTGTCAGTTCCCGGAAGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAGCCAGTCAACAGTCTCCTAGAGGCCGTCAAGGTTATCAAGCCTACAGTTTTGATTGGATCATCGGGCGTGGGAAAAACATTTACAAAGGAAGTGGTTGAGGCTATGACTTTAAACAATGATAAACCTCTCATTTTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACTGCTGAAGAGGCTTATCAGTGGAGTGAGGGTCGTACAATTTTCGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAGGTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCAGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCTATTCGAGTACATGATGATATGCTTCTAGCAGCTTCTGAAGCCTTGGCTAAACAAGTTAGCGAGGAGAACTACAAAAATGGTTTGATTTACCCACCATTCTCTAATATCAGAAAAATCTCAGCCAATATAGCTGCAAATGTTGCTGCCAAGGCCTACGAACTGGGCTTGGCCACTCGTCTTCCTCGACCTCAGAATCTTGTGGAGTATGCTGAGAGTTGCATGTATACCCCTGTATACCGCAACTATAGGTGA 2205 0.4472 MAAHGKYGSAETKSLSSHLPLYKRHWATILAQLSQSCGFLPAPPYLCATYITLSSRNSIYYRPTETKPLSFLSLPHMIWLNIASLMGHGCSKKIGISGCWGGDKRKISEKVVLRVNSQVSQNNNIHSTGEEEEGEEKKVIGRNMESTLKSLRDGESVLDLSPRSTVSGGVEDVYGEDRATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSNQSLQEKKLMHNIRQYQVPLQKYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPVTIDVGTNNEKLLNNEFYIGLRQNRATGQEYYELLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKTPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGKTFTKEVVEAMTLNNDKPLILALSNPTSQSECTAEEAYQWSEGRTIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVSEENYKNGLIYPPFSNIRKISANIAANVAAKAYELGLATRLPRPQNLVEYAESCMYTPVYRNYR 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03511 734 PANTHER MALIC ENZYME-RELATED 161 733 - -
Phco4g03511 734 CDD NAD_bind_1_malic_enz 450 728 - -
Phco4g03511 734 SMART Malic_M_2 450 703 IPR012302 GO:0051287
Phco4g03511 734 FunFam Malic enzyme 448 734 - -
Phco4g03511 734 ProSitePatterns Malic enzymes signature. 446 462 IPR015884 GO:0004471
Phco4g03511 734 Gene3D - 193 447 IPR037062 GO:0004471
Phco4g03511 734 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 450 733 IPR036291 -
Phco4g03511 734 Pfam Malic enzyme, N-terminal domain 259 439 IPR012301 GO:0004471
Phco4g03511 734 FunFam Malic enzyme 193 447 - -
Phco4g03511 734 Pfam Malic enzyme, NAD binding domain 450 702 IPR012302 GO:0051287
Phco4g03511 734 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 172 449 IPR046346 -
Phco4g03511 734 Gene3D - 448 734 - -
Phco4g03511 734 PRINTS Malic enzyme signature 265 289 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 361 383 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 325 354 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 421 439 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 580 596 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 477 493 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 PRINTS Malic enzyme signature 446 462 IPR001891 GO:0004470|GO:0004471
Phco4g03511 734 SMART malic_2 259 440 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03511 Phco-Chr4 55193572 55201225 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03511 4 55193572 55201225 Phco1g00234 1 1658560 1665173 ECH
Phco4g03511 4 55193572 55201225 Phco7g00959 7 7787447 7792043 ECH
Phco4g03511 4 55193572 55201225 Phco4g03511 4 55193572 55201225 ECH