Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03510 ATGGGTCGTCGTAGGATTGAAATTGCAGAGGTGAAGGATCCCAACACCAAGCAAGTTACATTTTCCAAGCGCCGCACAGGTTTGTTCAAAAAAGCAAACGAATTGTCTGTTTTGTGCGGTGCAGAAATTGCTATTGTTATGTTCTCTCCTGGGAAAAAGCCTTTCTCTTATGGGCACCCAAGTGTTGATGTTGTTGCAGACAAATATCTTCGGAAGAAGCGAAGGTCAAATGTTGTCAGAGCAAATGTACGAGAAAATAACGCTTCTAATGAAGTTGGTGACAGGCTAAGTCAAGAGTTGTCTATTGTTCAAGTTCATACAGAGGAGGAACACAAGAAGGCTACGGAACTTGACATGAGAGAGAAAGAACAAGAAGCTTCACAATTCTCCCAAAACAAAGAATTGTTGCAAAGTTCACCAGTCCTTCAGCGCATGGTGGAAGATTATGTGGATGCGGTGGAGGTCTCAGAGTGTATGTTGCTTCTCGCAAAAGAAGCTGTCATTGGAATACCACATCGACCAATTACCAAAAGGAGAAGAAGGAATTGA 549 0.4262 MGRRRIEIAEVKDPNTKQVTFSKRRTGLFKKANELSVLCGAEIAIVMFSPGKKPFSYGHPSVDVVADKYLRKKRRSNVVRANVRENNASNEVGDRLSQELSIVQVHTEEEHKKATELDMREKEQEASQFSQNKELLQSSPVLQRMVEDYVDAVEVSECMLLLAKEAVIGIPHRPITKRRRRN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03510 182 MobiDBLite consensus disorder prediction 110 128 - -
Phco4g03510 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Phco4g03510 182 MobiDBLite consensus disorder prediction 110 132 - -
Phco4g03510 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g03510 182 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Phco4g03510 182 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Phco4g03510 182 Coils Coil 105 139 - -
Phco4g03510 182 PANTHER MADS BOX PROTEIN 3 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03510 Phco-Chr4 55189853 55190401 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g03510 SRF-TF 3.4e-23 No_clan