Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03509 ATGGGTCGTCGTAAGATTGAGATTACGGAAGTGAAGGACCCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAATGAATTATCAATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTACTCTTTTGGACACCCAAGTGTTGATATTGTTGTAGACAAGTTTCTGCAACAAGAAAGTGCATCAAATGTTGTGAAACCAAATGTTGATGAAGGAAATAGTTCTTCTAATGCTGACAACATAGATGCACTGAATCAACAACTATCTGGTGTTCAAACTCAAATAAACGAGGAACATAAGAAGGCTATCGAACTTGACAGGAGAAAGAAGCAACAAGACGTGACTAAACTTACCCACAACAAACAATTGCAACGTTCATACATAAGGATTCAACGTAAGGTGGAGGATTATCTTGATGCCATTGAAGTGTCAGAGTATATGTTACTTCTTGCAAAAGAACCTGTAATTGGAGTAACAAAACAAGTAACTACCAAAAGAAGAAAGAATTGA 552 0.3768 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDIVVDKFLQQESASNVVKPNVDEGNSSSNADNIDALNQQLSGVQTQINEEHKKAIELDRRKKQQDVTKLTHNKQLQRSYIRIQRKVEDYLDAIEVSEYMLLLAKEPVIGVTKQVTTKRRKN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03509 183 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phco4g03509 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 Coils Coil 95 115 - -
Phco4g03509 183 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Phco4g03509 183 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Phco4g03509 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 Coils Coil 134 154 - -
Phco4g03509 183 PANTHER MADS BOX PROTEIN 3 145 - -
Phco4g03509 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Phco4g03509 183 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03509 Phco-Chr4 55184183 55184734 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g03509 SRF-TF 1.3e-24 No_clan