Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03507 ATGGGTCGTCGTAAAATTGAAATGGCTGCAGTGAAGGATCCTAATACGAGGCAAGTCACATTTTCTAAGCGTCGAGCAGGTTTATTCAAAAAGGCGAATGAATTGTCTATACTGTGTGGTGCAGAAATCGCCATTGTTGTGTTCTCAATTGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTTGATGTTGTTGCAGCCAAATTTCTTGAACAAGAAATCGAACCAAATGATGTCAAACAAAACAGTGTAGAAGTTGGTGACATGGATAGGTTGAATCAACAATTGCTAGATATTCAAGCCCAACTACTTGTGGAGGAAAAGAAGGTCTTAGAGCATGATCAGATACTAAAACAACACTCATTTAAACAATTACAAGATTCATATTCAGAATTCCAACTTAGGCTGAAAGATTATGTTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAACAACCCGTAGTCGACACAACAAAACAGGTGAAGAAAAGAAAAAACAATTGA 513 0.3821 MGRRKIEMAAVKDPNTRQVTFSKRRAGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDVVAAKFLEQEIEPNDVKQNSVEVGDMDRLNQQLLDIQAQLLVEEKKVLEHDQILKQHSFKQLQDSYSEFQLRLKDYVDAIEVSECLILLAQQPVVDTTKQVKKRKNN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03507 170 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Phco4g03507 170 Coils Coil 89 109 - -
Phco4g03507 170 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Phco4g03507 170 PANTHER MADS BOX PROTEIN 3 127 - -
Phco4g03507 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Phco4g03507 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g03507 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g03507 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g03507 170 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Phco4g03507 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g03507 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03507 Phco-Chr4 55174247 55174759 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco4g03507 SRF-TF 2e-23 No_clan