Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03485 ATGAATAATATGAGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCAAAGCTGGAAGAACATCAACTGTGTGGATCCAAACAGTGCCCTGGTTGTGGTCACGAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCAGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTTGAAGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACCAGACCAGTGATGGTGAATGGCACACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAATAGAAAACCCGAAAAGACAAACTGGGTGATGCACCAGTACCATATAGGCCAGCACGAGGAAGAAAAGGAGGGAGAGCTTGTGGTGTCGAAGATATTCTACCAGACACAACCGAGGCAATGCAATTGGACAGATAGAAGTGCCACAACTGGTGAAGGAAGTGGCGAACAACAAGCCAACACTAGTGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTGTCACTCACAGAGATGAAATGTCTGCTATCATTGGAGTCCCTCAAATAACAGCCTTCAACACTGCCATGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCCTTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAAGTGCAAGCATCAAGGTCGTGTGACGAAGTACATGAACGGCATAATATTGTAGCACATCATCATCAACAACAGCAGCAGAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGATGACAACTCCTACCATGTCTCCAGAATCATGCTTCAAAATGAAAATTTCCAGCAACAGCAGCAACACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACCTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTTCTGGCCAGACCCTGGCAACCTGCACGATCATTCATGA 1344 0.4598 MNNMSNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHEFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGTQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHIGQHEEEKEGELVVSKIFYQTQPRQCNWTDRSATTGEGSGEQQANTSGRRDSGSGSCSSKEVVTHRDEMSAIIGVPQITAFNTAMDIQQLKSDHFSFIPFRKSFDEVGIGEASTAREVQASRSCDEVHERHNIVAHHHQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQQHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSFWPDPGNLHDHS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03485 447 FunFam NAC domain-containing protein 73 56 212 - -
Phco4g03485 447 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Phco4g03485 447 MobiDBLite consensus disorder prediction 216 248 - -
Phco4g03485 447 MobiDBLite consensus disorder prediction 216 251 - -
Phco4g03485 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 334 IPR044799 GO:0003700
Phco4g03485 447 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Phco4g03485 447 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Phco4g03485 447 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03485 Phco-Chr4 55007527 55011949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco4g03485 NAM 5.6e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03485 4 55007527 55011949 Phco4g03485 4 55007527 55011949 ECH