Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03479 ATGATGTTGGGGGAGACCCACCGGGCGAATCCAACCGTACACGTGCCACCGTGGCCGCTCCTCCACGAATCCTCACCGGAGATCTTTTCTCCGTACGCCGCCAATGCCGATTACTCTCCGTACTCTCTGCAAGAAGCGCTCAACGCGCTTCAGCACTACGACTCAACAGATGCTGAGTCAGACTCTGATGTTCCGTCTCTGGAACCGGAAGTCCCGGTTGACGCCTATTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCGCGTGGCAGGTCACATGACTGGACTGAGTGTCCGTACGCCCACCCCGGCGAAAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGCACGGCGTGCCCCGATTTTCGCAAGGGGAGTTGCAAGAAGGGTGATGCATGCGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCGGCTCGTTACCGTACTCAACCGTGTAAGGATGGCACCAGTTGCCGCCGGCGGGTTTGTTTCTTTGCCCACACGCCCGAGCAACTAAGGGTTTTGCCGCAGCAGAGTCCACGCAGTGCGGACTCGTACGACGGGTCTCCTTTAAGACACGCGGTCGAGTCCTCCAAGACGGTGGCGCCCTTCGTGTCTTCTCCCGGGTCGGTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCGCCGATGACTCGTTCGGGGTCTGTGTGTGTTAACGAGATGGTTGCCTCGCTTAGAAACTTGCAACTGGGGAAGGTTAAGTCGTTGCCTTCTTGCTGGAATGTTATAGGGTCTCCCGGGTTCGGATCACCCAGAGGACCCGTGATCCGACCCGGATTCATCAGTCTCCCTTCGACCCCAACGCAGGCTCCTGTTCGCGGCGGGATGAACTACTTTGATCACTGGGATCAGAGTTGCCAGGAAGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAATGTTCTTGACGGGTCGGGGTCGGGTGAGCCCGTTGCTCCGGATGTTGGGTGGGTCTCGGAGCTGGTGAGTCGCTGA 1080 0.5852 MMLGETHRANPTVHVPPWPLLHESSPEIFSPYAANADYSPYSLQEALNALQHYDSTDAESDSDVPSLEPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAVESSKTVAPFVSSPGSVSPPVESPPMSPMTRSGSVCVNEMVASLRNLQLGKVKSLPSCWNVIGSPGFGSPRGPVIRPGFISLPSTPTQAPVRGGMNYFDHWDQSCQEEPVMERVESGRNIRARMFEKLSKENVLDGSGSGEPVAPDVGWVSELVSR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03479 359 Gene3D - 121 184 - -
Phco4g03479 359 PANTHER UNKEMPT FAMILY MEMBER 42 357 IPR045234 -
Phco4g03479 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Phco4g03479 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Phco4g03479 359 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Phco4g03479 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Phco4g03479 359 MobiDBLite consensus disorder prediction 206 233 - -
Phco4g03479 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03479 Phco-Chr4 54936335 54937414 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco4g03479 zf-CCCH 7.8e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03479 4 54936335 54937414 Phco4g03479 4 54936335 54937414 ECH