Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03478 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTCAAAAGGGGTCCTTGGTCTCCTGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAACATGGCACTGGTGGCAATTGGATAACTCTCCCGCAAAAAGCAGGCCTTAAGCGGTGTGGGAAGAGTTGTCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACGGAGGAGGAAGACCAAGTTATCTGCACCCTTTATTCCACTATCGGAAGCAGGCAAGTTCACTCTTTCTTTGTATATATTCTTAGCAAGTGGTCCCTTATTGCGGCTCAGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACACTAAGTTAAAGAAAAAGTTTTTGGTAGCAAACACCAATTCCACTGTCAAAACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCAAGTTGAAGACTGTGTCTTTGATCATGAGCACTCAGCTGAGTCTCATGTTTTGGGTTCGGAGCAGACACACATTCTAGTTCCTTCACCATTGCCTTTAGGATCTCATGTCTCGGGTCTAGGCAGCAGTGTACCACTATCCAGTGAAGTTTCAGTTCTTTCAAACTCAACATCCTTGGTGAAACAGGAAAACGAGACTCAATGGTTCAGCTATCATGACAACATTGAAGGTGAAAATGAAGCACTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCTCAAGAAAAAAGCAGCGAAATTGCCCCATCTTTTGGCTAA 795 0.434 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTEEEDQVICTLYSTIGSRQVHSFFVYILSKWSLIAAQLPGRTDNDVKNHWNTKLKKKFLVANTNSTVKTVCPQFTTSTTPQSQVEDCVFDHEHSAESHVLGSEQTHILVPSPLPLGSHVSGLGSSVPLSSEVSVLSNSTSLVKQENETQWFSYHDNIEGENEALLLDFVYEDLLLSNGFVSQEKSSEIAPSFG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03478 264 CDD SANT 71 125 IPR001005 -
Phco4g03478 264 ProSiteProfiles Myb-like domain profile. 63 125 IPR001005 -
Phco4g03478 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 129 IPR017930 -
Phco4g03478 264 Pfam Myb-like DNA-binding domain 69 123 IPR001005 -
Phco4g03478 264 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco4g03478 264 CDD SANT 16 62 IPR001005 -
Phco4g03478 264 SMART sant 67 127 IPR001005 -
Phco4g03478 264 SMART sant 13 64 IPR001005 -
Phco4g03478 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Phco4g03478 264 Gene3D - 70 128 - -
Phco4g03478 264 FunFam Transcription factor RAX3 7 68 - -
Phco4g03478 264 Gene3D - 7 68 - -
Phco4g03478 264 PANTHER OS09G0431300 PROTEIN 1 178 - -
Phco4g03478 264 SUPERFAMILY Homeodomain-like 11 121 IPR009057 -
Phco4g03478 264 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03478 Phco-Chr4 54926628 54927800 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g03478 Myb_DNA-binding 7.1e-09 CL0123