Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03457 ATGGGGAGGAAGTGCTCACATTGTGGAGTCATAGGGCACAATTCAAGGACCTGCACATCTTTGAGAGGCTCTACTTTCGTTGGACTTCGCCTCTTTGGCGTTCAATTAGACACCTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCTTTACCCTCTTCATCATCTTCCTCTTTTTCTTCATCAAGAATAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTATCTGTCAGATGGTCTCATAGGTCGAGTTCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACATAGAATATTCCTTGTTGGACTGGAGAAGCTGGGAAAGGGTGATTGGAGGGGAATTTCTAGAAACTTCGTGACCACAAGAACCCCAACACAAGTGGCAAGCCATGCTCAGAAGTACTTTCTTAGATTGGCAACTATAGATAAGAAGAAGCGACGTTCAAGTCTCTTTGACGTGGTTGGTAGCAACAGCCCCAGCATAGGAGGTTGTAATTCAGTTTCGCCTTATCATGAAAATGATGAGTCTAAATGTGAAGTTAAGAATAATGATGCCACTTTGTCGTTGCTAACCTACTTTCAACAAGAAACCAAATCAGATTATAATAAGCAAGAAAATCTTGATAATTGCCCTCATCAAGTTCCTAATCTGGAGCTTACTCTCTTGAGCCAATTAGTGTGA 693 0.4214 MGRKCSHCGVIGHNSRTCTSLRGSTFVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRITIDENSDRTSFGYLSDGLIGRVQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDVVGSNSPSIGGCNSVSPYHENDESKCEVKNNDATLSLLTYFQQETKSDYNKQENLDNCPHQVPNLELTLLSQLV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03457 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Phco4g03457 230 FunFam transcription factor MYB1R1 93 144 - -
Phco4g03457 230 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Phco4g03457 230 Gene3D - 93 145 - -
Phco4g03457 230 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Phco4g03457 230 PANTHER TRANSCRIPTION FACTOR KUA1 3 188 - -
Phco4g03457 230 SMART sant 91 141 IPR001005 -
Phco4g03457 230 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Phco4g03457 230 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Phco4g03457 230 CDD SANT 94 139 IPR001005 -
Phco4g03457 230 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03457 Phco-Chr4 54795757 54796929 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco4g03457 Myb_DNA-binding 1.8e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03457 4 54795757 54796929 Phco4g03457 4 54795757 54796929 ECH