Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03437 ATGGCACTAAGTGGTAGGCATTACTGGATCATCTTCATCCTTTTTCAAGCACCCCTCTTTCTTCTCTATTCTGCCGCTCCGGACTTTGAATTGCTCCTCAAACTCAAAGATAACTTAGAAAACTACGGTTCCTCCTTGGACTCATGGAACTCTACCACTCCTCCTTGCAACGTTGGCCATGCCAACTGGCATGGCATTCTTTGCTACGAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGGCTCACAGGGGTCATTGACATAGAATCTCTAAAAGACTTGCCTTACCTAAGAACCTTGAGTTTCATGAACAATAATTTGGAGGGTTCATGGCCCGAAATTCACCACTTGGTTGGTCTCAAGTCTATTTACCTTTCGAATAACAAGTTTTCTGGGGAGATTCCTTATAGAGCCTTCGAGGGGTTAAAGTGGTTGAAGAAAATTCATCTGTCGAACAACCAATTCTCGGGTTTTATTCCAACTTCGGTGACGCTGTTGCCGAGACTCATAGAGCTGAGGTTGGATGGGAATGACTTCACTGGCCCCATTCCCCATTTTCATCACCTGAACAGATTGAGATCGTTTAATGTTGCTAATAATGAGTTGCAGGGTCAGATTCCTCACACCATTAGTAGAATGCCGGTTTCTTCCTTTGCTGGTAATGAAAGGTTATGTGGAGCCCCATTGGAGTCATGCACCGCGAAGCCCTCCACTGCGAGCATCATTGTGGCAGTGGTGGTTGTTTCCCTGGCAGTGCTTGTGATTGGAGCAGTAGGGTTCATCATTCACAGAAGAAAGAAACGAGAGTCTGCAACGGGCTTGGGCAATCCATCCAGTGGCCTTGGCAAAGGGCGTCTGAGGGACGTGGGTGATGAGAACCTCTTGTCCTCAAGGTCAATGGGCTCCACACACAGCAGAAGAGGTGATCACATGAGACTCTCTTTTCTGAGAGATGACAGAGAAAGGTTTGACCTTCAAGAGTTGCTGAAAGCCTCTGCTGAGATTTTGGGAAGTGGCTGCTTCAGCTCTTCATACAAGGCTGCTTTGATAAATGGGCCAACAATAGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTCCAAGAGCACATGAGAAGGCTAGGGAGTTTGACTCATCCTAACTTGCTTCCTCCAGTGGCTTACTATTACAGAAAGGAAGAGAAGCTTGTGGTCACAGACTATGTTCACAATGGCAGTCTCGCTGTTCGCCTTCATGGGTACCAATCCCTGGGAGAACCAAGCCTTGACTGGCCAGTCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTGTACAGGGACATGCCAAGCCTAATTGCCCCACATGGAAATCTCAAGTCCTCTAATGTTCTCTTGACTGAATCTTTTGAGCCTCTCCTCACAGACTATGGCCTAGTCCCAGTGATAAACCAGGAATTGGCTCAGGACATCATGGTGATATACAAGAGTCCTGAGTATTTGCAACATGGAAGGATTACAAAGAAGAGTGATGTGTGGTGTCTTGGAATACTGATTCTGGAGATCCTAACCGGGAAGTTCCCTGCAAACTTTTTGCAAAAGGGTAAAGGAAGTGAGGTGAGTTTGGCAAGTTGGGTGGATTCAGTTGTGCCAGAAGAGTGGACCAATGCTGTGTTTGATCAAGAAATGGGGGAAACAAAGAACAGTGAAGGAGAGATGGGGAAGCTTTTGAAGATTGCCTTGTGTTGTTGTGAAGCGGATGTGGATAAGAGGTGGGATTTAAAGGAATCAGTAGTGAAAATCCTTGAGGTGAAGCAAAGGGATGATGATCAAGACAATTTTTTTACTTCTTATGCTAGTGAAGCAGGCATGAAGTCTTCAACTTGA 1890 0.4598 MALSGRHYWIIFILFQAPLFLLYSAAPDFELLLKLKDNLENYGSSLDSWNSTTPPCNVGHANWHGILCYEGKVWGVKLENMGLTGVIDIESLKDLPYLRTLSFMNNNLEGSWPEIHHLVGLKSIYLSNNKFSGEIPYRAFEGLKWLKKIHLSNNQFSGFIPTSVTLLPRLIELRLDGNDFTGPIPHFHHLNRLRSFNVANNELQGQIPHTISRMPVSSFAGNERLCGAPLESCTAKPSTASIIVAVVVVSLAVLVIGAVGFIIHRRKKRESATGLGNPSSGLGKGRLRDVGDENLLSSRSMGSTHSRRGDHMRLSFLRDDRERFDLQELLKASAEILGSGCFSSSYKAALINGPTIVVKRFKQMNNVGKEEFQEHMRRLGSLTHPNLLPPVAYYYRKEEKLVVTDYVHNGSLAVRLHGYQSLGEPSLDWPVRLKIVKGIAKGLEYLYRDMPSLIAPHGNLKSSNVLLTESFEPLLTDYGLVPVINQELAQDIMVIYKSPEYLQHGRITKKSDVWCLGILILEILTGKFPANFLQKGKGSEVSLASWVDSVVPEEWTNAVFDQEMGETKNSEGEMGKLLKIALCCCEADVDKRWDLKESVVKILEVKQRDDDQDNFFTSYASEAGMKSST 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03437 629 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Phco4g03437 629 SUPERFAMILY L domain-like 53 215 - -
Phco4g03437 629 Gene3D Transferase(Phosphotransferase) domain 1 407 618 - -
Phco4g03437 629 FunFam pollen receptor-like kinase 1 300 406 - -
Phco4g03437 629 FunFam Nuclear pore complex protein NUP107 25 186 - -
Phco4g03437 629 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Phco4g03437 629 ProSiteProfiles Protein kinase domain profile. 331 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03437 629 Pfam Protein tyrosine and serine/threonine kinase 335 598 IPR001245 GO:0004672|GO:0006468
Phco4g03437 629 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
Phco4g03437 629 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Phco4g03437 629 Gene3D Ribonuclease Inhibitor 188 233 IPR032675 -
Phco4g03437 629 Pfam Leucine rich repeat N-terminal domain 26 68 IPR013210 -
Phco4g03437 629 FunFam Pollen receptor-like kinase 1 407 616 - -
Phco4g03437 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 610 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03437 Phco-Chr4 54608347 54611215 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco4g03437 PK_Tyr_Ser-Thr 3.4e-27 CL0016