Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03434 ATGAAAGATGTTGGTTCCATTTTCCCTCGAACCATCTCAAATCCGTCTAATAATGTAAGTGTACTCCAAAGCGAAGGGGAACCTGAATGCGGTTTTCTGCGATCTCGATCCAGATCCAAATTCATGGGGATTTGCTTTAGCATTGAAGACAAGAGCCATCTCTCCGTCTCCGATTCCAACGCCAAACCTAAGCCTCCAGTAGGTCATGAATCTGCCGCTTCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGCTGGATATAGCAATGTCGATATTTTCACGTATGAGGAACTGAGGCTCGCGACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGTGTGAGGTCGGGTTACAAGGCCACTGTGGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAGGGAGACAGGGAATGGCTCACCGAAGTCAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGCGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGTCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGATGTTTATGGATTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGAAGGGCACTAGACAAGAGTAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTTCTGAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTGAAGGTGGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCGCTAATGAGCCAAGTTGTTGAAATTCTCGAAAACTTTCAGTCAAGTGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGGTTGTAGCAGTAGTGTAACCCTTTATGAGGTTCCCAAGGGCAGCAATGACACTCCAACTTAA 1266 0.4487 MKDVGSIFPRTISNPSNNVSVLQSEGEPECGFLRSRSRSKFMGICFSIEDKSHLSVSDSNAKPKPPVGHESAASIVSINIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKATVVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSSGENEEDQMLQTGCSSSVTLYEVPKGSNDTPT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03434 421 ProSitePatterns Protein kinases ATP-binding region signature. 113 142 IPR017441 GO:0005524
Phco4g03434 421 SUPERFAMILY Protein kinase-like (PK-like) 89 385 IPR011009 -
Phco4g03434 421 PANTHER OS01G0588500 PROTEIN-RELATED 64 388 - -
Phco4g03434 421 CDD STKc_IRAK 113 387 - -
Phco4g03434 421 FunFam Serine/threonine-protein kinase BIK1 75 189 - -
Phco4g03434 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Phco4g03434 421 Pfam Protein tyrosine and serine/threonine kinase 113 384 IPR001245 GO:0004672|GO:0006468
Phco4g03434 421 Gene3D Transferase(Phosphotransferase) domain 1 190 408 - -
Phco4g03434 421 ProSiteProfiles Protein kinase domain profile. 107 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03434 421 FunFam Probable serine/threonine-protein kinase PBL8 190 402 - -
Phco4g03434 421 Gene3D Phosphorylase Kinase; domain 1 82 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03434 Phco-Chr4 54578588 54583903 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco4g03434 PK_Tyr_Ser-Thr 1.8e-46 CL0016