Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03404 ATGGACGATACTGAAACTAAGCAACGAATCGAGGAAACAGTTCGCAGGATTTTGCAAGAGTCGGACATGGACGAGGTTACGGAGTCTAAGATTCGAAAGCAGGCCTCTGAGCAACTTGGTCTCAACCTGTCTCAGCCCCATTTCAAAGCCTTCGTGAAACAGGTAGTGGGGGCTTTTCTCCAAGAAAAGCTACAAGAACAAGAAGAAAATGATGAGAAAGAAGATGAAGAAGAACAAGGAGTTTCCAAGGGCAGGGAGTACGATGATGAAGGCGATCTCATCATCTGCAAGCTTTCAGAGAAGAGAAGGGTGACCATTCAGGATTTCAGAGGGAAAACGTTGGTGTCCATTCGCGAGTACTATAAAAAAGATGGCAAGGATCTTCCTACTTCCAAAGGAATAAGTTTGACAGAGGAGCAGTGGTCCGCCTTCAAAAAAAATCTGCCCGCCATAGAAAAAGCCATTAATAAAATGGAATCTCGTTGA 486 0.4444 MDDTETKQRIEETVRRILQESDMDEVTESKIRKQASEQLGLNLSQPHFKAFVKQVVGAFLQEKLQEQEENDEKEDEEEQGVSKGREYDDEGDLIICKLSEKRRVTIQDFRGKTLVSIREYYKKDGKDLPTSKGISLTEEQWSAFKKNLPAIEKAINKMESR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03404 161 Pfam Transcriptional Coactivator p15 (PC4) 96 147 IPR003173 GO:0003677|GO:0006355
Phco4g03404 161 SUPERFAMILY DEK C-terminal domain 3 60 - -
Phco4g03404 161 PIRSF RNA_polymII_KELP 1 161 IPR017415 -
Phco4g03404 161 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 157 IPR009044 GO:0003677|GO:0006355
Phco4g03404 161 Gene3D - 2 63 - -
Phco4g03404 161 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Phco4g03404 161 MobiDBLite consensus disorder prediction 63 86 - -
Phco4g03404 161 FunFam RNA polymerase II transcriptional coactivator KELP 85 161 - -
Phco4g03404 161 Pfam DEK C terminal domain 5 60 IPR014876 -
Phco4g03404 161 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 160 IPR045125 GO:0003713|GO:0060261
Phco4g03404 161 Gene3D Transcriptional Coactivator Pc4; Chain A 84 161 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03404 Phco-Chr4 54339292 54341144 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Phco4g03404 DEK_C 1.3e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03404 4 54339292 54341144 Phco4g03404 4 54339292 54341144 ECH