Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03399 ATGGAGGCGGATTTCGTGACCAATGATATTCTCACACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGAAGCTATGGAAGGGGAAACATGTGGAATATGCATGGATATGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAACGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAACAAAGTTGAGGATGATTCACTCCTCAGAGATGATGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGAAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCAGTACATCAATAGCATGTGATTCATGTGATATATGGTATCATGCATTCTGTGTGGGATTTGATACTGAAAGTATGTCAGACAATACATGGTTATGCCCCAGATGTGTAGCAGATGATGTTTCTAAAGGAGCATCTAATTCAATGGAGAGGACAACCGTGGATTGTAATGCAGACAATAGTAACAATGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATGCAGGAGAAACAGCTGTTGTTGTCTCGATGGTTGATAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGGAGATCCAATGACTGAATCATGTATTTTAATGTTTGACACAAATGATCAGCAAAGTGGCGAAATTAGGACAAATTCATTACCAATCATGGAGGAAGAAGAACTGGAACTGTCTTTATCAAACAATTTATCCTGTAGCCTAACTTCTATGTCCTTAGTGCATAATGATTTAGAGAAAAGTACCAGTGGAGCAATGAATGAAGCCAGTCGCTTGGATGGAACCCAGTTTTTGGATGAATCTCATACCAAAACTAGTCCATCCAGAATTGAATCCAATATGGGTCTTGATCTTGGTTTGTCAGTGGGCTCTTTTTTATCTGTTGATAATGCAGACAAGAGTGAACCAAAAGATCAAGCAACCATTGTCCCATGCTTGACTTCAGAAGAATGTTTTTCGAAAGGAGATGAAATCGAAGTCAATGCTTGTAAAGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTACTGAGCAAGTTCATATAAAGGCTGAGGATGGAGATGCCGAGCCTGAACTTCCTGATGAAGTTGTGGCAAAGAAAATTAAAGCTACTGATAGGAAAATGAGTAATACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTCCAAAACACCCTGCTTTAAAACATTCTCCAACAAAGGCAACTGTCACACCAGATATAATGAATATAGTTAAAGGGACAGACCGCAGGCTTTCCAAGGGACATAGTGACACTAATGCTTGTGACAAGTCATCTGAAAACAAAGGAAATATGGCCGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCATAACAAATCCTCCATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTTCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGATGGTCCAGAATCAAAGCAAGCTTCGGAAAGTCAAACCAAGAATCCTATACTTTCGAGATTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTGAAACCTCTCTCTGTGCTTAAAACTATTGATAACTCTGAGCAAACTAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCGTTGATAACAATACTATTAAAGCAACAGATGTAAACTATCTCTTATCAAAGATCAGTTTTGTTTCAACTGAAAAAAAAGTAGACAAGAAGATTGTTCATGGCCCAGTTCTTGATAATTCAACTTCTGGTAAAATACGTTTAAACAACCACTTAGAAAGGACACCAGTCTCGTCAGCTGGTGCCAAAACTGGCGCAAAGGAGTTAGGTCTTAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCTACAACCAGCGGAAACACAGCAAACGGAAATCAGGAAGAGAATGCAATATTTAAAGGACATTATCCTTTACTTGCCCAACTGCCAATTGATATGAGACCAGTATTGGCACCTTCTCGCCACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAAGAACACAAATCTGTCTGTGATTCGCAGAACTGGTATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGTAAGCTTGTGTACTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACAAATAACACGAAATCTGATGTAGCCTTAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACCGATCAACAATCAGAACTAAATACTGATGATCTTTCAGCTAACCCTGCGGTTGAAACAGCCTTGAAAAATGCTGGTCTGCTGTCTGACTCCCCACCTAGTAGTCCACATGAGAACAGAGAAACATGTAATGGTGACATGTTGGGGCCAGATAATATACTTGAACTGGATTCGCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGGTCTGAAAGAAATGAAGTGCCAGGAGAGGCATCCTGCTCACCAAATTGTCACAATGATGCAGTCCATAGGGATAGGGCTTCTGTTTCTTCTGAGCTCCTACCCTTTGAGAGTGCTGTTGAGCCACTTGACACAGAATTTGAAGACTTATTATACGGCCCAGACAAAGAACCACTCATAAAAAAATTTCCAGCCGGTGAATCAAGATCATTACATGGAGATGGGAAGGCAGAAACTCTAAGTGTCGCTGATGACTACCATAATGATGTACAACATGCTTTGGATAATGCAGTAAAAGCTTCAGATCGGGGGAATGAGAATCTCACAGAAAAAGTTTCTGATACTACTATCACCGACCAATCTTCTAATATATCTGAGGCCGGCGAAAGTTTTCAACGGAAGGAAGAGAAATTCGATGTCACTGCTAAGCAGATTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGTTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAAGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3864 0.4004 MEADFVTNDILTLTHDAFDANDNDDEAMEGETCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSLLRDDDDWSIEGKNNTLSFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLSTSIACDSCDIWYHAFCVGFDTESMSDNTWLCPRCVADDVSKGASNSMERTTVDCNADNSNNECHAEDSFSGKVSVSVADAGETAVVVSMVDRTKWVPATSEKSLLPFEVGGDPMTESCILMFDTNDQQSGEIRTNSLPIMEEEELELSLSNNLSCSLTSMSLVHNDLEKSTSGAMNEASRLDGTQFLDESHTKTSPSRIESNMGLDLGLSVGSFLSVDNADKSEPKDQATIVPCLTSEECFSKGDEIEVNACKDNARVAGGKRKHADYSTEQVHIKAEDGDAEPELPDEVVAKKIKATDRKMSNTNDTANDHLLENAPKHPALKHSPTKATVTPDIMNIVKGTDRRLSKGHSDTNACDKSSENKGNMAGLRVKKIMKRNSEDRESSLVVQNLRKEIREAVHNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPSAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGPESKQASESQTKNPILSRLYLADTSVFPRKEDVKPLSVLKTIDNSEQTKQNNPSEKVPNLSVDNNTIKATDVNYLLSKISFVSTEKKVDKKIVHGPVLDNSTSGKIRLNNHLERTPVSSAGAKTGAKELGLKSGCMKNDKRKWALEVLARKTATTSGNTANGNQEENAIFKGHYPLLAQLPIDMRPVLAPSRHNKIPISVRQTQLYRLTERLLKNTNLSVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSDVALDTSPPASSAMLTDQQSELNTDDLSANPAVETALKNAGLLSDSPPSSPHENRETCNGDMLGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGSERNEVPGEASCSPNCHNDAVHRDRASVSSELLPFESAVEPLDTEFEDLLYGPDKEPLIKKFPAGESRSLHGDGKAETLSVADDYHNDVQHALDNAVKASDRGNENLTEKVSDTTITDQSSNISEAGESFQRKEEKFDVTAKQIDSVNHITKKVEVYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03399 1287 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Phco4g03399 1287 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Phco4g03399 1287 MobiDBLite consensus disorder prediction 928 953 - -
Phco4g03399 1287 MobiDBLite consensus disorder prediction 970 984 - -
Phco4g03399 1287 SMART PHD_3 132 184 IPR001965 -
Phco4g03399 1287 PANTHER RING FINGER PROTEIN 41, 151 115 1277 - -
Phco4g03399 1287 Pfam PHD-finger 148 184 IPR019787 -
Phco4g03399 1287 SUPERFAMILY RING/U-box 24 78 - -
Phco4g03399 1287 SMART ring_2 33 71 IPR001841 -
Phco4g03399 1287 SMART ring_2 124 183 IPR001841 -
Phco4g03399 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 189 IPR013083 -
Phco4g03399 1287 MobiDBLite consensus disorder prediction 494 513 - -
Phco4g03399 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Phco4g03399 1287 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Phco4g03399 1287 Pfam Ring finger domain 32 72 IPR001841 -
Phco4g03399 1287 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Phco4g03399 1287 MobiDBLite consensus disorder prediction 969 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03399 Phco-Chr4 54299894 54311884 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco4g03399 PHD 3.3e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g03399 4 54299894 54311884 Phco4g03399 4 54299894 54311884 ECH