Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03378 ATGGAGAGTGAATGGAGCTGGGAGCAGAACAAACTCATCAATGAGTTAATTCAGGGGATGGAGCTAGCAAGGAAGTTGAAGGAAGACTTGAGGATGCCGTATTCAGTTGACTCAAGAGATATGCTGGTGCAGAGGATAGTATCTTCTTATGAAAAGGCTCTACTCATTCTAAGGTGCAATGCATCAACTTCCGAGTTGCAGGCCACGAGTCAAGCAACTGCAACTTTGTTACCAGAGTCCCCAATATCTGTCCATGGAAGTCCTCTGAGTGAGGATGTTGATGGGGCCATCAAGGATCACAAAGAAATTCAACATGATGCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGTGATAGTGGCCTAGAAGGGCCACAAGAAGATGGCTACAACTGGAGAAAATACGGTCAAAAAGACATCCTGGGAGCCAAATATCCAAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCCACGAAGCAAGTGCAAAGGTCAGATGAAGATCCCAAAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCTGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACATTCATAACATTGACATTCACCATGCACAGGCATCACAAGAAAGCCTTCCGAAGTTCAGAAACACCATGTCTGTCAACACAGAAAAGCTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACAATACAACCACAGCTTTATTCCTTTGACCCTTGAGAATGAGTACTTCTTGAGCGACCAATACCAAACGTACCTGTTATCTCCAACAACACCAGAATCAAACTATTTACCATCTCCAACTTTCCAGATTAACGACTTTGATGGAATCTACAACAAGCCTTATTCAGAATCAGATATTAACGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCAATTCCCGATTTCAATTTCTCACTTGATCCAGCGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGA 1086 0.4309 MESEWSWEQNKLINELIQGMELARKLKEDLRMPYSVDSRDMLVQRIVSSYEKALLILRCNASTSELQATSQATATLLPESPISVHGSPLSEDVDGAIKDHKEIQHDAKKRKITPKWMDHVRVSCDSGLEGPQEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPKIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHIHNIDIHHAQASQESLPKFRNTMSVNTEKLDNGDMAYPFTFPSTSSGCMKQYNHSFIPLTLENEYFLSDQYQTYLLSPTTPESNYLPSPTFQINDFDGIYNKPYSESDINEIISTNTSATNSPIPDFNFSLDPAEIDPNFPFNTPGFFS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03378 361 FunFam WRKY transcription factor 53 118 195 - -
Phco4g03378 361 Pfam WRKY DNA -binding domain 133 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g03378 361 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g03378 361 SUPERFAMILY WRKY DNA-binding domain 131 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g03378 361 Gene3D WRKY domain 119 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g03378 361 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g03378 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 266 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03378 Phco-Chr4 54141262 54142571 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g03378 WRKY 7.8e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00246 4 1545950 1547183 Phco4g03378 4 54141262 54142571 PCT