Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03362 ATGGACTTTCTACCCATTTTCTCTTGCATTTCCCTGTTGTGTTTGGTTCTGTGGCAAGGAAGTGGTGAGCCTGTTGAAGATAAGGAGGCGTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCCAGGCCTCTGAATTGGAATGAGAGCTCCCCCATGTGTGCTTCTTGGACTGGTGTGACTTGCAATGAAGACAAGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGCCGCCTCTCAGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATATCTGGGCATTTCCCTTCTGATTTTTCCAATCTAAAGAACTTGTCTTTCCTCTACCTTCAGTTCAACAACTTGTCTGGGCCTTTGCCTGATTTCTCGGCCTGGAAGAACCTCACTGTCGTCAATTTGTCCAACAACCATTTCAATGGAAGCATTCCTGTCTCCCTTAACATCTTGCCTCAGCTTTCCGGTTTGAACCTTGCAAACAACTCTCTCTCTGGGGAAATTCCTGAGCTCAATTTGTCAAGATTGCAAGTGCTGAATCTGTCCAACAACAATTTGCAGGGAACTGTTCCCAAATCTCTGCTGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCTTTGGAACTTTTTCCACAGTTTCTCCGGCACCTCAACCCGCTTTTGAGCCGTCTTTGAAGTCTAGGAGGCGTAGAAGGCTCAGTGAAGCGGCGCTGTTGGGAGTGGTTGTTGCTGCTGGTGTTTTAGGCCTCGTGGCTTTTATTTCTTTGACTTTCGTGTGCTGCTCAAGAAGAGGTGATGAGGATGAGGAAACCTTCAGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCAATCTCAAGAAACCAGGATGCAAATAATAAGCTAGTTTTCTTTCAGGGATGTAATTATGCCTTTGATTTGGAAGATTTGTTGAGGGCTTCTGCAGAGGTTCTGGGGAAGGGAACTTTTGGAACTGCCTACAAGGCAATACTAGAAGATGCAACCACGGTTGTTGTGAAGAGGTTAAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAGCACATGGAGATTGTAGGAAGTCTTAAGCATGAGAATGTTGTTGAGCTCAAGGCATATTATTATTCTAAAGATGAGAAACTCATGGTATATGATTATCACAGTCAGGGAAGCATAGCTTCCATTTTGCATGCCAAGAGAGGAGAGGAGAGGGTGCCTTTAGATTGGGATACAAGGCTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAACGGTGGCAAGCTTGTACACGGCAACATCAAATCCTCAAACATCTTTCTCAACACCAAACAGTATGGATCTGTGTCTGACCTTGGCCTGGCAACCATATCAAGCTCACTTGCCTTACCAATATCACGAGCAGCCGGTTACCGGGCACCCGAAGTGACAGACACCAGAAAAGCAGCACAGCCCTCAGATGTTTACAGTTTTGGTGTGGTGTTGCTAGAGCTTCTTACTGGGAAATCCCCTATCCACACGACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCGGTTGTGCGTGAAGAGTGGACGGCTGAAGTGTTTGACCTTGAGCTGATGAGATATCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAAAGGCCTAAGATGTCTGAAGTTGTTAAGATGATAGAAAATGTGAGGCAGATTGATGGAGACCCTTATTCATCATCTGGGAACCAAGCTGAACAACTTAAATTGTCTCAACGTGACAGTGGTAACTCTCCTTCCACTCCCTCCCACTTCCCAAGAGGAAGTGAATGA 1914 0.4572 MDFLPIFSCISLLCLVLWQGSGEPVEDKEALLDFVNKFPPSRPLNWNESSPMCASWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLSALQTLSLRSNVISGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGSIPVSLNILPQLSGLNLANNSLSGEIPELNLSRLQVLNLSNNNLQGTVPKSLLRFPESAFSGNNISFGTFSTVSPAPQPAFEPSLKSRRRRRLSEAALLGVVVAAGVLGLVAFISLTFVCCSRRGDEDEETFSGKLHKGEMSPEKAISRNQDANNKLVFFQGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHAKRGEERVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGSVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDGDPYSSSGNQAEQLKLSQRDSGNSPSTPSHFPRGSE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03362 637 FunFam pollen receptor-like kinase 1 295 400 - -
Phco4g03362 637 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Phco4g03362 637 Gene3D Transferase(Phosphotransferase) domain 1 402 618 - -
Phco4g03362 637 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 606 - -
Phco4g03362 637 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03362 637 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Phco4g03362 637 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Phco4g03362 637 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Phco4g03362 637 PANTHER OS05G0588300 PROTEIN 7 607 - -
Phco4g03362 637 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g03362 637 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Phco4g03362 637 SUPERFAMILY L domain-like 37 206 - -
Phco4g03362 637 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Phco4g03362 637 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Phco4g03362 637 Gene3D Ribonuclease Inhibitor 136 227 IPR032675 -
Phco4g03362 637 MobiDBLite consensus disorder prediction 601 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03362 Phco-Chr4 54050477 54053377 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco4g03362 Pkinase 3e-35 CL0016