Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco4g03347 | ATGGGTAACTGCAGCAGCAGCCACGGCGGCGGTGGCGCCCCCGCTACTTCCAATTACTCCGACGAACTTCCCCGGCGCAACGGCATCACCGTCCTACCTCCGAACACGAACCCTTCACCTCCAGTCCCGAAGCCCCAAGCGTCGTCCTCGCTGGGCCGCGTGCTGGGCCGGCCCATGGAGGATGTCCGGTCCATTTACATCTTCGGGCGCGAGCTGGGCCGCGGGCAGTTCGGCGTGACGTACCTGGTGATCCACAAGACCACGAAGGAGCAGTTCGCGTGCAAATCGATCGCAACGCGAAAGCTCGTGAACCGCGACGACATCGATGACGTCCGGCGCGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAATCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGGATTATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAATTCCTTCCGCCAGATCGTGACGGTGGTGCACAATTGCCACTCCATGGGCGTGATGCACAGGGACTTGAAGCCCGAGAATTTCTTGCTGCTCAACAAGGACGATGATTCCCCTCTCAAGGCCACGGATTTTGGCCTCTCCGTCTTCTTCAAGCCAGGAGATGTGTTTAGAGACATTGTTGGGAGCGCTTACTATGTTGCTCCTGAGGTGTTGAGAAAAAGTTATGGGCCTGAGGCTGATATTTGGAGTGCTGGGGTTATACTCTACATTCTGCTTTCTGGTGTTCCACCTTTCTGGGCAGAAAATGAACAGGGTATATTTGATGCAATTCTGCGTGGACATATTGATTTCACATCGGATCCTTGGCCTTCCATATCAACTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGTTGAAGTACTCAATCATCCCTGGATGAGAGTGAATGGAGATGCATCAGATAAGCCTCTTGATATTGCTGTTTTGTCAAGAATGAAACAATTCCGAGCAATGAACAAGCTAAAAAAAGTAGCCCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGCGGAACAATCACATTTGAGGAGTTGAAAGCTGGTCTCCCAAAACTGGGTAGTAAACTTTCTGAGTCTGAAGTAAGGCAATTGATGGAAGCGGCTGATGTAGACGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCATCTATATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGTTACATCACAATGGAAGAGTTGGAATCTGCCCTCAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACCGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATATCCCACATAACCCAGAGACGTCGCAAATAA | 1560 | 0.4981 | MGNCSSSHGGGGAPATSNYSDELPRRNGITVLPPNTNPSPPVPKPQASSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVIHKTTKEQFACKSIATRKLVNRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSFRQIVTVVHNCHSMGVMHRDLKPENFLLLNKDDDSPLKATDFGLSVFFKPGDVFRDIVGSAYYVAPEVLRKSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFTSDPWPSISTSAKDLVKKMLRADPKERLSAVEVLNHPWMRVNGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDISHITQRRRK | 519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco4g03347 | 519 | ProSiteProfiles | Protein kinase domain profile. | 66 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco4g03347 | 519 | ProSitePatterns | Protein kinases ATP-binding region signature. | 72 | 95 | IPR017441 | GO:0005524 | |
| Phco4g03347 | 519 | CDD | STKc_CAMK | 66 | 323 | - | - | |
| Phco4g03347 | 519 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 186 | 198 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco4g03347 | 519 | ProSitePatterns | EF-hand calcium-binding domain. | 416 | 428 | IPR018247 | - | |
| Phco4g03347 | 519 | ProSitePatterns | EF-hand calcium-binding domain. | 487 | 499 | IPR018247 | - | |
| Phco4g03347 | 519 | FunFam | Calcium-dependent protein kinase 1 | 332 | 507 | - | - | |
| Phco4g03347 | 519 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 65 | 499 | - | - | |
| Phco4g03347 | 519 | SMART | efh_1 | 443 | 471 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | SMART | efh_1 | 371 | 399 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | SMART | efh_1 | 407 | 435 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | SMART | efh_1 | 478 | 506 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | Pfam | EF-hand domain pair | 442 | 504 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | Pfam | EF-hand domain pair | 372 | 432 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | SUPERFAMILY | EF-hand | 363 | 505 | IPR011992 | - | |
| Phco4g03347 | 519 | FunFam | Calcium-dependent protein kinase 1 | 68 | 151 | - | - | |
| Phco4g03347 | 519 | ProSitePatterns | EF-hand calcium-binding domain. | 380 | 392 | IPR018247 | - | |
| Phco4g03347 | 519 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 474 | 509 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Phco4g03347 | 519 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 325 | IPR011009 | - | |
| Phco4g03347 | 519 | SMART | serkin_6 | 66 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco4g03347 | 519 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Phco4g03347 | 519 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 439 | 473 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 331 | - | - | |
| Phco4g03347 | 519 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 367 | 402 | IPR002048 | GO:0005509 | |
| Phco4g03347 | 519 | FunFam | calcium-dependent protein kinase 1 | 152 | 331 | - | - | |
| Phco4g03347 | 519 | Gene3D | Phosphorylase Kinase; domain 1 | 68 | 151 | - | - | |
| Phco4g03347 | 519 | Pfam | Protein kinase domain | 68 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco4g03347 | 519 | Gene3D | - | 332 | 508 | - | - | |
| Phco4g03347 | 519 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 403 | 438 | IPR002048 | GO:0005509 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco4g03347 | Phco-Chr4 | 53941524 | 53947273 | Dispersed/Wgd |
Transcription factors information