LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g03332	ATGAACGTGGAAATGTCAACAGAATTCGTATTAATTTTTATTTCAGGAAGCTTGATACATATTCTTTTGAATGAAGATCAGGGAATTGGTACTTGGTTGATGGATGAATTTGCGTGCTTGGGGGATTGGGATTTGGAGGCTATTGTGAGAGGAAGCAGTGGTGAAGCCACCACCATGGACGATCCAAATCCTGATTTTTCTTATTTCTTCTCTGACCAAGATGAGCTACTTGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTGGAAGATCTTTACAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCGCACCATCGTCACAACTTCTCTCTCTATCCCCATAGAACCCCAACAAGTCAAAGAACTCAAAGCATCAGAAGAGAAACTAGCTCTACAAGGCTTGAAAGTCCCCCCAACACCAAAGTGTAAAAAAGGCAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGACGATGCATGGGCATGGCGTAAATATGGACAGAAACCAATAAAGGGTTCTCCCTATCCAAGAAGCTACTATAGGTGCAGCAGTTCGAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCAGTTTTTTTGGTTACCTACACTGCTGAACACAGCCATCCCCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACTAGAAAGAACAATTCCCTCGTTCCCCCTCCAACCACTCGTAACCAGAAGACTACTTGTTCCTCAAGGACACCTTTGGTGGTGCAATCCATTGAAGATAAACTTGTAACAAGTGTGCAAGAAAGCATGGACTTGAAGAAAGAGGAAGATTTTCTTGAGTGGTGGGATGATCGTGCTCAATTTGGTGATGGTTGGATTCCAAGCTCAGATCTAGAGAAGCTTATTGAGTGCCAACATTTTGCACTAGATGGAGGTTTCACTGATGGTTATGCAAACTCATGA	1002	0.4391	MNVEMSTEFVLIFISGSLIHILLNEDQGIGTWLMDEFACLGDWDLEAIVRGSSGEATTMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPRTIVTTSLSIPIEPQQVKELKASEEKLALQGLKVPPTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLVPPPTTRNQKTTCSSRTPLVVQSIEDKLVTSVQESMDLKKEEDFLEWWDDRAQFGDGWIPSSDLEKLIECQHFALDGGFTDGYANS	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g03332	333	Gene3D	WRKY domain	154	232	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03332	333	ProSiteProfiles	WRKY domain profile.	165	231	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03332	333	FunFam	WRKY transcription factor 22	153	224	-	-
	Phco4g03332	333	MobiDBLite	consensus disorder prediction	233	259	-	-
	Phco4g03332	333	Pfam	WRKY DNA -binding domain	171	229	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03332	333	MobiDBLite	consensus disorder prediction	227	259	-	-
	Phco4g03332	333	SUPERFAMILY	WRKY DNA-binding domain	164	231	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03332	333	SMART	WRKY_cls	170	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco4g03332	333	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	121	263	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g03332	Phco-Chr4	53826098	53831052	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phco4g03332		WRKY	3.2e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g00282	4	1800078	1800949	Phco4g03332	4	53826098	53831052	PCT