Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g03323 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAACTATTTGAGACCAGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCATGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCGTGGATAAAAAAGAAAATAAGAAAGACTTCAGTGTCTTCAACCACTATTGCACAAAGTATCGATCAGAATTCTTCTCAGTTCAACTTCAATTCCAATCTACTAGGCCACTTTTCTTCCAACCTAGATAATCTACAAACAAAACCACCAGTTCAAGAAACCTTGTTTTCTTCAACATGCCCTCTGTTCATGTTTGACACACCTTCACTGGAAGGCCCAGCAACAGACTGCAACAGTGTACGAGCAGAACATTTTCAAGATGCTGTGGGCTTGAGCTCTGAAACATGGAACCTGAGCCACCATCAGGTTCAGGCACTTCCTCCTCTCACAGTGACTGTAGGCTTGGACACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCAATTGAGGTACAACCTTGTACCATGGACGAACAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCATGGTTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTTTGGGACAGTGTTGAAGGACATATTGGTGGGGAAGAACTGGGACCGAATTCGGCAAATGCGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 942 0.4384 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDQNSSQFNFNSNLLGHFSSNLDNLQTKPPVQETLFSSTCPLFMFDTPSLEGPATDCNSVRAEHFQDAVGLSSETWNLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQPCTMDEQGDIALECLQRHGLNEWVETQQQCPNFLFWDSVEGHIGGEELGPNSANAEANTLSPFPSSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g03323 313 CDD SANT 69 112 IPR001005 -
Phco4g03323 313 FunFam MYB transcription factor 6 66 - -
Phco4g03323 313 FunFam Transcription factor MYB26 68 137 - -
Phco4g03323 313 MobiDBLite consensus disorder prediction 298 313 - -
Phco4g03323 313 CDD SANT 17 61 IPR001005 -
Phco4g03323 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco4g03323 313 SMART sant 66 114 IPR001005 -
Phco4g03323 313 SMART sant 13 63 IPR001005 -
Phco4g03323 313 MobiDBLite consensus disorder prediction 292 313 - -
Phco4g03323 313 Gene3D - 6 66 - -
Phco4g03323 313 Gene3D - 68 139 - -
Phco4g03323 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco4g03323 313 PANTHER MYB DOMAIN PROTEIN 55 1 166 - -
Phco4g03323 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco4g03323 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco4g03323 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco4g03323 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco4g03323 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g03323 Phco-Chr4 53758806 53761100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g03323 Myb_DNA-binding 4.7e-15 CL0123